CB611164

Overview
NameCB611164
Unique NameCB611164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1847 contig Csv1_Contig1847:5..286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.938e-17
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVV 262
            MAGHKIAHATLKGPSVVKE+             WKM+ WN QRK+RVFYDLLE+GEI VVV
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVV 61          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVVKK 268
            MAG +IAHATLKGPSVVKEIC            WKM+ WN QRK+R FYD+LEKG+I+VVV++
Sbjct:    1 MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVVKK 268
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+GEI VV  +
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVVASE 63          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.671e-16
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVV 259
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+GEI+VV
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: COX5C_HORVU (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVVKK 268
            MAG ++AHATLKGPSVVKEI             WKM+ WN QRK+R FYD+LEKG+I+VVV++
Sbjct:    1 MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C2_HELAN (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVV 262
            M G ++AH  LKGPSVVKE+             WKM+ WN QRK+R FYDLLEKGEI+VVV
Sbjct:    1 MGGGRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVV 61          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C1_HELAN (Cytochrome c oxidase subunit 5C-1 OS=Helianthus annuus GN=COX5C1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVVKK 268
            M G ++AH  LKGPS VKE+             WKM+ WN QRK+R FYDLLEKGEI+VVV++
Sbjct:    1 MVGGRVAHPVLKGPSEVKELIIGSVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVQE 63          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: CX5C4_ARATH (Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana GN=At5g40382 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 2
Query:   92 KIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVVVK 265
            KI  A  KGPSVVKEI             WKM+ WNNQR+++ FYDLLEKGEI+VVV+
Sbjct:    6 KIGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVE 63          
BLAST of CB611164 vs. ExPASy Swiss-Prot
Match: COX5C_IPOBA (Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:   80 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKGEINVV 259
            MAG  +AH   KGPSVVKE+             WKM+ WN+QR+++ FYD+LEKG+I+VV
Sbjct:    1 MAGGHVAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKGQISVV 60          
The following BLAST results are available for this feature:
BLAST of CB611164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CX5C3_ARATH6.938e-1767.21Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
COX5C_ORYSJ3.443e-1661.90Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
CX5C2_ARATH5.873e-1660.32Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH7.671e-1663.33Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
COX5C_HORVU8.481e-1558.73Cytochrome c oxidase subunit 5C OS=Hordeum vulgare... [more]
CX5C2_HELAN1.225e-1357.38Cytochrome c oxidase subunit 5C-2 OS=Helianthus an... [more]
CX5C1_HELAN3.563e-1353.97Cytochrome c oxidase subunit 5C-1 OS=Helianthus an... [more]
CX5C4_ARATH1.146e-1156.90Putative cytochrome c oxidase subunit 5C-4 OS=Arab... [more]
COX5C_IPOBA2.554e-1150.00Cytochrome c oxidase subunit 5C OS=Ipomoea batatas... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_C12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611164 ID=CB611164; Name=CB611164; organism=Citrus sinensis; type=EST; length=282bp
GGGGGCTCAATCTGACTCTTGCTATTCGCTTAATCGGTCTCGTCTCCGCC
CGGGTTTATAGCATTTAACTAGAAGTGAAATGGCTGGCCACAAGATTGCT
CATGCCACCTTGAAAGGTCCAAGCGTTGTCAAGGAGATATGTTTAGGAAT
TACACTGGGGCTGGCTGCTGGTGGTCTTTGGAAGATGAATCAGTGGAATA
ATCAAAGAAAGTCAAGGGTATTTTATGACTTGCTAGAAAAAGGTGAAATT
AACGTTGTTGTAAAAAAATAAAGGGGTTACCT
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