CB611167

Overview
NameCB611167
Unique NameCB611167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF GFL   LTNAP  A++ + F N K+DW+ETP  H F+ D+PGL             ILQISGERS E E+K
Sbjct:   24 WDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEK 97          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.974e-15
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 WDPFHGFL--ASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF GF   +SAL NA S+AR+ + F N ++DWKETP  H F+ DLPGL             +LQISGERSKE E+K
Sbjct:   24 WDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEK 100          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.748e-13
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 WDPFHGFLA-SALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            +DPF GFL  S L NAP  A + + F N K+DW+ETP  H F+ DLPGL             ILQISGERS E E+K
Sbjct:   24 FDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEK 98          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.356e-12
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSS--ARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF G L S L+  P S  A ET+ F N +IDWKETP  H F+ DLPG+             +L+ISG+R++E+E+K
Sbjct:   27 WDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEK 103          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.954e-12
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF  F     ++A    +ET+ F N  IDWKETP  H F+ DLPGL             +LQISGER+KE+E+K
Sbjct:   24 WDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEK 98          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 WDPFHGF-LASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF  + L ++   +    +ET+ F N  IDWKETP  H F+ DLPGL             +LQISGER+KE+E+K
Sbjct:   24 WDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEK 100          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSS---------ARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF GF   + + +  S         + ET+ F   +IDWKETP  H F+ D+PGL             +LQISGERSKEQE+K
Sbjct:   18 WDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEK 102          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF G +++        ARET+   N +IDWKETP  H  + DLPG+             +LQISGER +EQE+K
Sbjct:   24 WDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEK 93          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 WDPFHGFL-----ASALTNAPSSAR----ETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF GF      +S+ +  PS  R    ET+ F   +IDWKETP  H F+ D+PGL             ILQISGER+KEQE+K
Sbjct:   18 WDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEK 102          
BLAST of CB611167 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 WDPFHGFLASALTNAPSSARETSQFPNGKIDWKETPPGHGFQGDLPGLXXXXXXXXXXXXXILQISGERSKEQEKK 228
            WDPF G   S +    +S R+T+ F N ++DWKETP  H F+ DLPG+             +L ISG+RSKE+E K
Sbjct:   17 WDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDK 90          
The following BLAST results are available for this feature:
BLAST of CB611167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HSP17_ARATH1.335e-1551.3217.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH2.974e-1552.5618.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH4.748e-1350.6517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_CHERU2.356e-1246.1518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP11_DAUCA8.954e-1246.0517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_DAUCA1.169e-1144.1618.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ1.169e-1142.3518.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_HELAN1.527e-1143.4217.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17A_ORYSJ1.995e-1145.8817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ1.995e-1143.4216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_A04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611167 ID=CB611167; Name=CB611167; organism=Citrus sinensis; type=EST; length=229bp
TGGGATCCTTTCCACGGGTTCTTGGCCTCTGCCCTTACCAACGCGCCGTC
TTCGGCTAGGGAAACATCCCAATTCCCCAATGGAAAAATTGACTGGAAAG
AAACTCCTCCGGGTCATGGATTCCAGGGTGATCTTCCAGGGCTGAGGAAA
AAAAAAGTGAAAGTTGAGGGTGAAAAAGGCAGGATTCTGCAAATAAGCGG
GGAAAGGAGCAAGGAACAAGAAAAAAAAA
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