CB611180

Overview
NameCB611180
Unique NameCB611180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:5..426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
[Close]
BLAST of CB611180 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:  171 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTALDVVYALNMLGQ 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTA+DVVYAL   G+
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96
The following BLAST results are available for this feature:
BLAST of CB611180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA2.003e-3293.33Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA2.003e-3293.33Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE2.003e-3293.33Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE2.003e-3293.33Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR2.003e-3293.33Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL2.003e-3293.33Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ2.003e-3293.33Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH2.003e-3293.33Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT2.003e-3293.33Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT2.003e-3293.33Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_H02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611180 ID=CB611180; Name=CB611180; organism=Citrus sinensis; type=EST; length=422bp
GCGGGGACTACAAAAAAACCGAGCAAAGGATGAGAGTGGGGGAAAAAAGA
AAGAAAAATTCCCAACTAGTTTGAAAACCGTAATTAGCATTTTAATTTCG
TAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAG
GAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACC
AAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAG
CGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTTTGGAGA
ACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACG
GTGACCGCTTTGGATGTCGTTTATGCGCTCAATATGTTAGGGCAGGACTC
TCTATGGGTGATGGATTNGATG
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