CB611185 | Citrus Genome Database

Overview


Name	CB611185
Unique Name	CB611185
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	492

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6145	contig	Csv1_Contig6145:485..977.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.316e-37
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2

Query:  122 PTLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 268
            PTLVPLLGI VWEHAYYLQYKNV+PDYLKNIW VMNWKYAS+VY KECP
Sbjct:  183 PTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECP 231

HSP 2 Score: 71.633 bits (174), Expect = 2.316e-37
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK
Sbjct:  143 MNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTK 181

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-37
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 2

Query:  122 PTLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 268
            P LVPLLGI VWEHAYYLQYKNVKPDYLKNIW V+NWKYA++VY+KECP
Sbjct:  180 PNLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWKVINWKYAAEVYEKECP 228

HSP 2 Score: 72.4034 bits (176), Expect = 6.673e-37
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWLGLD E KRLV+ETTANQDPLV K
Sbjct:  140 MNAEGAALQGSGWVWLGLDKELKRLVIETTANQDPLVIK 178

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.248e-36
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 2

Query:  122 PTLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 268
            PTLVPLLGI VWEHAYYLQYKNV+PDYLKNIW V+NWKYAS+VY+KE P
Sbjct:  180 PTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESP 228

HSP 2 Score: 71.633 bits (174), Expect = 4.248e-36
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK
Sbjct:  140 MNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTK 178

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.248e-36
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2

Query:  128 LVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 268
            LVPLLGI VWEHAYYLQYKNV+PDYLKNIW VMNWKYA++VY+KECP
Sbjct:  182 LVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYANEVYEKECP 228

HSP 2 Score: 72.0182 bits (175), Expect = 4.248e-36
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWLG+D E KRLV+ETTANQDPLV+K
Sbjct:  140 MNAEGAALQGSGWVWLGVDKELKRLVIETTANQDPLVSK 178

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.424e-33
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 2

Query:  125 TLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 262
            +LVPL+GI VWEHAYYLQYKNV+P+YLKN+W V+NWKYAS+VY+KE
Sbjct:  184 SLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229

HSP 2 Score: 72.7886 bits (177), Expect = 1.424e-33
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            +SAEGAA+QGSGWVWLGLD E K+LVV+TTANQDPLVTK
Sbjct:  143 MSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTK 181

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM_ORYSJ (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica GN=SODA PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.755e-32
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 2

Query:  128 LVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 256
            LVPLLGI VWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  185 LVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYE 227

HSP 2 Score: 69.707 bits (169), Expect = 9.755e-32
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            +SAEGAALQGSGWVWL LD E K+L VETTANQDPLVTK
Sbjct:  143 MSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTK 181

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.805e-31
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 2

Query:  125 TLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 256
            +LVPLLGI VWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  186 SLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229

HSP 2 Score: 67.781 bits (164), Expect = 2.805e-31
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK
Sbjct:  145 MNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTK 183

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.805e-31
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 2

Query:  125 TLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 256
            +LVPLLGI VWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  185 SLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 228

HSP 2 Score: 67.781 bits (164), Expect = 2.805e-31
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK
Sbjct:  144 MNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTK 182

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM1_MAIZE (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.653e-31
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 2

Query:  125 TLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 256
            +LVPLLGI VWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  188 SLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 231

HSP 2 Score: 67.3958 bits (163), Expect = 3.653e-31
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK
Sbjct:  147 MNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTK 185

[Close]

BLAST of CB611185 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.653e-31
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 2

Query:  125 TLVPLLGIGVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 256
            +LVPLLGI VWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:  186 SLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229

HSP 2 Score: 67.3958 bits (163), Expect = 3.653e-31
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:    3 VSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 119
            ++AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK
Sbjct:  145 MNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTK 183

The following BLAST results are available for this feature:

BLAST of CB611185 vs. ExPASy Swiss-Prot

BLAST of CB611185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
SODM_HEVBR	2.316e-37	89.80	Superoxide dismutase [Mn], mitochondrial OS=Hevea ...	[more]
SODM_CAPAN	6.673e-37	85.71	Superoxide dismutase [Mn], mitochondrial OS=Capsic...	[more]
SODM_PRUPE	4.248e-36	85.71	Superoxide dismutase [Mn], mitochondrial OS=Prunus...	[more]
SODM_NICPL	4.248e-36	87.23	Superoxide dismutase [Mn], mitochondrial OS=Nicoti...	[more]
SODM_ARATH	1.424e-33	78.26	Superoxide dismutase [Mn], mitochondrial OS=Arabid...	[more]
SODM_ORYSJ	9.755e-32	83.72	Superoxide dismutase [Mn], mitochondrial OS=Oryza ...	[more]
SODM4_MAIZE	2.805e-31	81.82	Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze...	[more]
SODM2_MAIZE	2.805e-31	81.82	Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze...	[more]
SODM1_MAIZE	3.653e-31	81.82	Superoxide dismutase [Mn] 3.1, mitochondrial OS=Ze...	[more]
SODM3_MAIZE	3.653e-31	81.82	Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze...	[more]

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Properties


Property Name	Value
Genbank description	ALBEDO0001_IIIaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_H08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB611185 ID=CB611185; Name=CB611185; organism=Citrus sinensis; type=EST; length=492bp
GGGTGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTT
GGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCA
GGATCCGCTGGTGACTAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGG
TGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATT
ATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTG
TATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGACCATGGAGTT
CTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGC
AGCTTTTCACGCTGAAGTGACAATAAAACGATATTTTGCACATGATGACA
GACACCCTTTCTTTTGCAGGGAGTGTTACTTGTGTATCCCTTATGTGACA
TCCGAAATAATATTGGGGTTTATGCTCTTTTTGTATCTCACT