CB611192

Overview
NameCB611192
Unique NameCB611192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8746 contig Csv1_Contig8746:109..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611192 vs. ExPASy Swiss-Prot
Match: SQD1_SPIOL (UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.545e-84
Identity = 156/254 (61.42%), Postives = 187/254 (73.62%), Query Frame = 2
Query:   80 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTVYATATPF---TPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGXPNIDIEEGYITINHN 832
            MAHLLSTSCS+ +    K S +  N G    P SFT +TSKS  ++++     +Q+   V AT  P    T  +S +   +++ + S  KRVM+IGGDGYCGWATALHLS K Y+V IVD+L+RRLFDHQLGLDSLTPIASI +R+R W+ LTGK I+L++GDICD            PD VVHFGEQRSAPYSMIDRSRAV+TQ NNVIGT+NVLFA+KEF +ECHLVKLGTMGEYG PNIDIEEG+ITI HN
Sbjct:    1 MAHLLSTSCSMKVSPSEKLSSKCWNIGSTKYPMSFTQQTSKSAFKSLVHQRNNTQKLTVVRATTVPLNQETKAESGTSSFENNGNTSGRKRVMVIGGDGYCGWATALHLSKKNYDVCIVDNLVRRLFDHQLGLDSLTPIASIQNRIRRWQGLTGKTIDLHVGDICDFEFLAETFKSFEPDTVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTINVLFAIKEFSEECHLVKLGTMGEYGTPNIDIEEGFITITHN 254          
BLAST of CB611192 vs. ExPASy Swiss-Prot
Match: SQD1_ARATH (UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.224e-81
Identity = 156/252 (61.90%), Postives = 185/252 (73.41%), Query Frame = 2
Query:   80 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKT-SKSPIQTVILSAQRSQRCHTVYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGXPNIDIEEGYITINHN 832
            MAHLLS SC  ++ S    S +   +  +   T F  +  S+S ++ ++   ++ ++     ATA P T  Q       ++N  SK KRVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTPIASIHDR+  WK+LTGK+IELY+GDICD            PD+VVHFGEQRSAPYSMIDRSRAV+TQHNNVIGTLNVLFA+KEF +ECHLVKLGTMGEYG PNIDIEEGYITI HN
Sbjct:    1 MAHLLSASCP-SVISLSSSSSKNSVKPFVSGQTFFNAQLLSRSSLKGLLFQEKKPRKSCVFRATAVPIT--QQAPPETSTNNSSSKPKRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHN 249          
The following BLAST results are available for this feature:
BLAST of CB611192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SQD1_SPIOL1.545e-8461.42UDP-sulfoquinovose synthase, chloroplastic OS=Spin... [more]
SQD1_ARATH1.224e-8161.90UDP-sulfoquinovose synthase, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_G02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611192 ID=CB611192; Name=CB611192; organism=Citrus sinensis; type=EST; length=833bp
GGGGATTCTCAAGTTTCAAGTTTGCTTCTCTACGGGTGTATGTGCATATT
GTTGAGTTGAACCAGAGATTCAGATTAACATGGCACATTTGCTTTCGACT
TCATGCTCTCTGAACATTCCTTCTTGCCGCAAACCTTCTTTCCAGCAATT
GAACCAAGGCTTAATTGGCTTGCCTACCTCTTTTACTGTGAAAACATCCA
AATCTCCAATTCAGACGGTTATCTTGTCAGCACAAAGGTCTCAGAGATGT
CACACTGTTTATGCAACCGCCACCCCCTTTACCCCGACTCAGTCACGCTC
TGGTTTGCATCAGTCCTCCAATGATCCGTCCAAGGCAAAGCGGGTCATGA
TCATTGGTGGAGACGGCTATTGTGGTTGGGCTACTGCACTCCACCTATCC
AACAAAGGCTATGAGGTAGCTATTGTTGACAGTCTTATCCGTCGTCTCTT
TGACCACCAACTCGGTCTTGATTCCTTGACCCCTATTGCCTCCATCCATG
ATAGACTCCGCTGTTGGAAATCTCTTACTGGAAAAAATATTGAACTCTAC
ATTGGTGATATTTGTGACTTTGAATTCTTATCAGAAAGCTTCAAGTCATT
TGAACCTGATGCTGTTGTCCATTTTGGGGAGCAGCGCTCTGCCCCTTATT
CAATGATTGATCGGTCAAGAGCTGTGTTCACTCAGCATAATAATGTAATT
GGAACACTAAATGTCCTCTTCGCTATGAAGGAATTCAGACAGGAGTGTCA
TTTGGTGAAACTTGGGACAATGGGAGAATATGGANNCCCAAATATTGATA
TTGAGGAGGGTTATATAACGATTAATCACAACG
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