CB611194

Overview
NameCB611194
Unique NameCB611194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2620 contig Csv1_Contig2620:195..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611194 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.658e-42
Identity = 97/160 (60.62%), Postives = 114/160 (71.25%), Query Frame = 3
Query:  264 RRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXXXXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAMIKRERAMAYAYSHQLWKSTPKS 734
            RRE   RPEPTL  +HASATKIQ A+RGYMAR+SFRALKGLVRLQGVVRG +VKRQT NAMKYMQ +             MLENQA          + E    KW   SEAGN ++WD S+LTKEE ++R QRK +A+IKRER+MAYAYS +LWK++PKS
Sbjct:  307 RREIVYRPEPTLPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKMLENQA----------QVEKDEAKWA-ASEAGN-DNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYSRKLWKNSPKS 454          
BLAST of CB611194 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  303 ASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXXXXXMLE-NQAR-RQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAMIKRERAMAYAYSHQL-WKSTPKSAXTSLAD 755
            A+A  IQ+ +RG++ARR  + ++G  RL+ ++ G  V+RQ    +K MQ L             M E NQAR +Q   K+ KE    LG    G       +W+ S  +KE++EA M  K EA ++RERA+AYA++HQ   KS  K+A     D
Sbjct:  109 AAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKE----LGGLKNGG------NWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMD 252          
The following BLAST results are available for this feature:
BLAST of CB611194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IQD14_ARATH1.658e-4260.63Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
IQD1_ARATH4.706e-1337.01Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_G04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611194 ID=CB611194; Name=CB611194; organism=Citrus sinensis; type=EST; length=764bp
GGGGCCGAGCAGTAGATAGAAATATTTTGGGGGAAGCTGATAGAGAGCAG
AAATTAGTATTCAGGCCTCCAACTCCTCCCGAGCAACCCACAACACCACC
TTTTGTTGCTCAGAGAGTTGCTTCTCCAAGGGTTCCTTCTCAAAGGATTA
CCTCTCCAAGGGTTGCTTCTCCAAGGGTTGCCTCTCCAAGGCCAGTGTCT
CCAAGGGCAGCTCCTCCAAGGGCTGCTTCTCCAAGAGCTGCTTCTCCTCG
AATTGTTCAACATCGTAGGGAAAGACCGGAACCAACTCTAAGATATCGTC
ATGCTTCAGCTACTAAGATCCAAGCAGCCTACCGAGGCTATATGGCAAGG
AGGAGCTTCAGAGCTCTGAAGGGACTGGTGAGGCTTCAAGGAGTGGTGAG
GGGACAGAATGTAAAGCGCCAAACAACAAATGCCATGAAATACATGCAGC
TCTTGGTACGTGTCCAATCTCAGATTCAGTCTAGGAGGATCCAGATGTTA
GAGAACCAAGCACGGCGTCAGGCACAACACAAGAATGATAAGGAAGCAGA
AAGTACCTTAGGCAAATGGACATTTGGATCTGAGGCAGGAAATCATGAAG
ACTGGGATGCCAGCTTGCTTACAAAAGAAGAGATGGAGGCAAGAATGCAG
AGAAAGGTAGAGGCAATGATCAAGAGAGAAAGAGCCATGGCCTATGCATA
CTCCCACCAGTTGTGGAAATCCACTCCAAAATCAGCTCNNACATCTCTTG
CGGATGATCGATCA
back to top