CB611197

Overview
NameCB611197
Unique NameCB611197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:91..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 8.039e-105
Identity = 194/226 (85.84%), Postives = 206/226 (91.15%), Query Frame = 1
Query:   16 MAAVGIETKQPESAAPEEVCAAKGAS-KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            MAAVG+++++PE+A  EE C  KGA+ KQGEGL+QYYLQHIHELQ Q+RQKT+NLNRLEAQRNELNSRVRML+EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVV            PSTRVALRNDSYVLHL+LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    1 MAAVGVDSRRPETAM-EETCNVKGAAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.495e-100
Identity = 188/226 (83.19%), Postives = 199/226 (88.05%), Query Frame = 1
Query:   16 MAAVGIETKQPESAAPEEVCAAKGAS-KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            MAAVG+E + P +A  EE C  KGA+ KQGEGL +YYLQH+ ELQ   R+K++NLNRLEAQRNELNSRVRML+EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVV            PSTRVALRNDSYVLHL+LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    1 MAAVGVEARPPVTAM-EETCNVKGAAAKQGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   61 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP LFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 213          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   61 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP LFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 213          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   61 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP LFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 213          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   61 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP LFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 213          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.475e-82
Identity = 156/210 (74.29%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   61 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP LFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 213          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 4.746e-81
Identity = 151/200 (75.50%), Postives = 168/200 (84.00%), Query Frame = 1
Query:   91 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            S+ G GLRQYYL  I +LQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP  FE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:    9 SRGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 208          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 6.198e-81
Identity = 150/203 (73.89%), Postives = 170/203 (83.74%), Query Frame = 1
Query:   82 KGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            + A  +GEG R YY+Q I ELQL V +K  NL RL+AQRNELN++VRML+EELQLLQE GSYVGEVVK M K KVLVKVHPEGK+VV            P+ RVALRN+SY LH ILP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHP LF++LGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIR
Sbjct:   10 ESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 212          
BLAST of CB611197 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.076e-80
Identity = 146/196 (74.49%), Postives = 168/196 (85.71%), Query Frame = 1
Query:  103 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPVLFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 690
            +G++ YY   I EL+++V +K  +L RLEAQRNELN+RVRMLKEELQLL  PGS+V EVVK+MGKNKVLVKV+PEGK+VV            PSTR AL+++SY LH ILP+K+DPLV+LMKVEK+PDSTYDM+GGLD+QIKEIKEVIELPIKHP LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR
Sbjct:   14 KGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 209          
The following BLAST results are available for this feature:
BLAST of CB611197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PRS8A_ARATH8.039e-10585.8426S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8B_ARATH3.495e-10083.1926S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8_RAT1.475e-8274.2926S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.475e-8274.2926S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.475e-8274.2926S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.475e-8274.2926S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.475e-8274.2926S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_XENLA4.746e-8175.5026S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_DROME6.198e-8173.8926S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_DICDI3.076e-8074.4926S protease regulatory subunit 8 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_G08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611197 ID=CB611197; Name=CB611197; organism=Citrus sinensis; type=EST; length=722bp
GGGGACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGA
ATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAG
GAGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTC
CAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAA
CGAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTC
AAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAAT
AAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGA
TAAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTC
GTAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCC
CTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACAT
GATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGC
TTCCTATCAAACATCCCGTATTGTTCGAGTCTCTTGGAATAGCTCAACCC
AAGGGTGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGC
TAGAGCTGTGGCTCATCATACTGATTGTACTTTCATCAGGGGTTTCTGGT
TCTGAATTAATCCAAAAATACA
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