CB611230

Overview
NameCB611230
Unique NameCB611230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.422e-41
Identity = 85/112 (75.89%), Postives = 94/112 (83.93%), Query Frame = 3
Query:   54 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 383
            M   Q  TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG  PYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.218e-40
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 3
Query:   75 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 383
            TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG  PYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.878e-39
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 3
Query:   75 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 380
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG  PYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.654e-36
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 3
Query:   54 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 326
            MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.636e-30
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 374
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+ PYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.110e-26
Identity = 54/93 (58.06%), Postives = 76/93 (81.72%), Query Frame = 3
Query:   78 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            GL VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGF PYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.047e-26
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   81 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 380
            L VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GF P+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.016e-25
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 3
Query:   78 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            GL VGLNKG  +TK++LP RP+ RKG  SKR  FVR+++REVAGF PYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.706e-24
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GF PYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB611230 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.706e-24
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 3
Query:   87 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFTPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 356
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GF PYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CB611230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH3.422e-4175.8960S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH2.218e-4079.0560S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH1.878e-3978.1060S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_DAUCA5.654e-3681.3260S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_ENTCP4.636e-3068.7560S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36A_SCHPO3.110e-2658.0660S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC9.047e-2658.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO2.016e-2558.0660S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_XENTR1.706e-2461.1160S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA1.706e-2461.1160S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_A05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611230 ID=CB611230; Name=CB611230; organism=Citrus sinensis; type=EST; length=437bp
GGGGACTCCAACTCATCTTAGGTTTCCGCAGCAACTCAGTTTCGTCGGAG
GTGATGGCTCCGAAACAGCCAAATACTGGTCTCTTTGTTGGATTAAACAA
GGGTCATATTGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCA
AAGGGAAAACAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAA
GTTGCTGGCTTTACACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGT
CGGCAAGGACAAGAGGGCACTGAAGGTTGCGAAGAGAAAGCTTGGCACTC
ACAAGAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAG
AGTAGGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCT
ATATGTCTTGTTCACCCGAACTTGGGTTATTAAATTT
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