CB611238

Overview
NameCB611238
Unique NameCB611238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.259e-28
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1
Query:  118 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            MA++NLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASV YGIFLCIDCSAVHRSLGVHISFVR T
Sbjct:    1 MATENLTDKNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRST 65          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.663e-28
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 1
Query:  121 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            ++DNLTDKN+VFRKLK+KSENK+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVR T
Sbjct:    5 SADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRST 68          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1
Query:  118 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            MAS+NL DK  VF+KLKAKS+NK+CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR T
Sbjct:    1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRST 65          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  121 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            A  N T+   +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+R T
Sbjct:    3 AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRST 66          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.811e-20
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  121 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            A  N T+   +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+R T
Sbjct:    3 AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRST 66          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.263e-20
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  121 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            A  N T+    F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+R T
Sbjct:    3 AEPNKTEIQTFFKRLRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRST 66          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.068e-19
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  121 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            AS + T+   +F++L+A   NK CFDC AK+P+WAS+TYG+FLCIDCS VHRSLGVH+SF+R T
Sbjct:    3 ASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRST 66          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1
Query:  151 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            VF++L+A   NK CFDC AKNP+WAS+ YG+FLCIDCS VHRSLGVH+SF+R T
Sbjct:   13 VFKRLRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRST 66          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 9.043e-19
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  139 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            D     RK++A   NK+CFDC A+NPTW +VTYG+FLCIDCSAVHR+LGVH++FVR T
Sbjct:   11 DLQTAMRKMRALPPNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRST 68          
BLAST of CB611238 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.181e-18
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  118 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRIT 312
            M   +  D   +F++L++   NK+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+R T
Sbjct:    1 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRST 65          
The following BLAST results are available for this feature:
BLAST of CB611238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AGD9_ARATH1.259e-2887.69Probable ADP-ribosylation factor GTPase-activating... [more]
AGD8_ARATH3.663e-2885.94Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH6.248e-2887.69ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_PONAB2.811e-2064.06ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_HUMAN2.811e-2064.06ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_BOVIN6.263e-2064.06ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_MOUSE1.068e-1962.50ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_XENTR6.924e-1970.37ADP-ribosylation factor GTPase-activating protein ... [more]
YQP4_CAEEL9.043e-1965.52Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
ARFG3_PONAB1.181e-1858.46ADP-ribosylation factor GTPase-activating protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_B05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611238 ID=CB611238; Name=CB611238; organism=Citrus sinensis; type=EST; length=448bp
GGGGGCACCTCGTAAGGTTCATAATCTCATATTCTCGTTCAGGAAAAAAT
CAAAATCAAAATTTACAATCTTGGGGTTTCGTTTTTCGTAATTTTTATTT
CATAAAATTCTTTCTCGATGGCTTCCGATAATTTGACCGATAAGAACCTT
GTTTTCAGAAAACTGAAAGCAAAATCGGAAAACAAGATGTGTTTTGATTG
TAATGCTAAGAACCCGACGTGGGCCTCGGTGACTTACGGGATCTTTCTCT
GCATCGATTGCTCTGCCGTTCACCGTAGTCTCGGTGTCCACATCAGCTTC
GTTAGAATAACTTGCGGATCAAAATTCCTTGACTTGTATTAAGGTGGAGG
CACACGGACAGATTGTTTGGTCAAGAAATGTGATCTTTTTTTTGTAATAA
TCTATTGGATTTTCAGAATACCACTAGGGCTTACTAGATATGTAATTT
back to top