CB611241

Overview
NameCB611241
Unique NameCB611241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:134..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611241 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSISRREYAAAAPLGTISRTGIMEENDLRPAVREDSGASSAWAPDPITGYYRPGNRAVEIDPAELREMLLN 427
            MARSLFKAKLLLAPVADGISLSISRR YAAAAPLGTISRTGIME+NDLRPAVREDSGASSAWAPDPITGYYRP NRAVEIDPAELREMLLN
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLN 91          
BLAST of CB611241 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.581e-18
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSISRREYAAAAPLG---TISRTGIMEENDLRPAVREDSGA-----SSAWAPDPITGYYRPGNRAVEIDPAELREMLLN 427
            MARS+   KLL A + DG+ +SISRR Y+ A P     +  R G M + + R A++E S +     SSAWAPDP+TGYYRP N   EID AELREMLLN
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLN 99          
BLAST of CB611241 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSISRREYAAAAPLG---TISRTGIMEENDLRPAVREDSGA-----SSAWAPDPITGYYRPGNRAVEIDPAELREMLLN 427
            MARS+   K L A V D + +SISRR Y+ A P     +  R G M + + R A++E S +     SSAWAPDP+TGYYRP N   EID A+LREM+LN
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLN 99          
The following BLAST results are available for this feature:
BLAST of CB611241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI9.358e-4396.70Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI3.581e-1852.53Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.566e-1649.49Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_B08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611241 ID=CB611241; Name=CB611241; organism=Citrus sinensis; type=EST; length=502bp
GGGGCTCACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTAT
AGCTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGA
AACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAA
AACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTG
CTGATGGCATCTCGCTCTCCATTAGCAGGAGAGAATATGCTGCAGCAGCA
CCCTTGGGGACCATATCTCGGACTGGTATCATGGAGGAAAATGATTTGAG
GCCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATC
CCATCACTGGGTACTACAGGCCGGGGAATCGGGCGGTCGAGATTGATCCA
GCAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAAGC
AGTGGTGGCGCATATCAGCACATCCTTTGATCNTAGCGGCGCTNTAACTT
TT
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