CB611249

Overview
NameCB611249
Unique NameCB611249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.798e-89
Identity = 169/186 (90.86%), Postives = 175/186 (94.09%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGSVPMAAA 563
            +EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEIC SVIEESFGYLDA VERI GADVPMPYA NLER+ VP VEDIVRAAKRAC+ SVP+AAA
Sbjct:  173 AEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAA 358          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.494e-85
Identity = 159/180 (88.33%), Postives = 171/180 (95.00%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYGS 545
            +EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKDVTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGFPQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRACY S
Sbjct:  183 AEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRS 362          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.318e-57
Identity = 113/173 (65.32%), Postives = 140/173 (80.92%), Query Frame = 3
Query:   12 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            D RGLLK+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV   ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR
Sbjct:  178 DHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKR 350          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.969e-53
Identity = 113/176 (64.20%), Postives = 133/176 (75.57%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 527
            +EDARGLLKAAIRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL+AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V+E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct:  186 AEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.571e-53
Identity = 107/176 (60.80%), Postives = 134/176 (76.14%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            SEDA+GL+K+AIRD +PVV LENEL+YG +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  180 SEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.728e-53
Identity = 107/180 (59.44%), Postives = 139/180 (77.22%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 539
            +EDARGLLKAAIRDP+PVV LENE+LYG++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEVINLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER++ ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct:  185 AEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.481e-53
Identity = 108/176 (61.36%), Postives = 133/176 (75.57%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            SEDA+GL+K+AIRD +PVV LENEL+YG  F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  180 SEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 9.771e-53
Identity = 105/176 (59.66%), Postives = 133/176 (75.57%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            SEDA+GL+K+AIRD +PVV LENEL+YG +F +  E     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  180 SEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.849e-52
Identity = 103/176 (58.52%), Postives = 132/176 (75.00%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  180 SEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CB611249 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 4.849e-52
Identity = 103/176 (58.52%), Postives = 132/176 (75.00%), Query Frame = 3
Query:    6 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 530
            SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  180 SEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
The following BLAST results are available for this feature:
BLAST of CB611249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ODPB_PEA3.798e-8990.86Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH1.494e-8588.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI1.318e-5765.32Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST1.969e-5364.20Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE2.571e-5360.80Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO5.728e-5359.44Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN7.481e-5361.36Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT9.771e-5359.66Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB4.849e-5258.52Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN4.849e-5258.52Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611249 ID=CB611249; Name=CB611249; organism=Citrus sinensis; type=EST; length=740bp
GGGGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCG
GATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCC
GGTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAG
CTAAAATTGAGAGAGAAGGAAAGGATGTAACTATTACAGCTTTCTCAAAA
ATTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAAT
AAGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCA
CAATCAATGCTTCTGTCAGGAAAACTAACAGACTGGTAACAGTCGAAGAA
GGGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGA
GGAAAGCTTCGGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTG
ATGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAG
GTTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACGGATCTGTGCC
AATGGCTGCTGCACCATAAATGAACTGGATCTGCCCTGAAGCTTTGTCAG
ATCCTGGAACAATAGAGGGATTGTACATTTTCCCCGTTCTCAACACTTTT
TTGGGGGAATTGATCATGAAAGATCNGGAAATTNNTGATGACAGATCNNA
AATTTTGTGGCTTACTTTTCTCTTGTTAGATCGGAAAAAT
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