CB611250

Overview
NameCB611250
Unique NameCB611250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig432 contig Csv1_Contig432:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.610e-23
Identity = 62/135 (45.93%), Postives = 88/135 (65.19%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +   KT  + EL++  GM LDRGY SPYFITN KT++C L DP I+I EK+ S+      + E+   R+     +L++ ED+E+D LA+L+LN
Sbjct:  165 ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFN-ELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQ---RPLLIVSEDVESDALATLILN 295          

HSP 2 Score: 24.6386 bits (52), Expect = 5.610e-23
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  218 DQRQGARMAIDALVGNLYSTTHHI 289
            D R+G  MA+DA+V NL S    I
Sbjct:  145 DLRRGISMAVDAVVTNLKSKARMI 168          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.298e-23
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANGDR IGELIAKA E      +  +   KT  + EL++  GM +DRGY+SPYFITN KT++C L DP I+I EK+ SN    + + ++  +       +L++ ED+E+D LA+L+LN
Sbjct:  166 ARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISN---INAMVKVLELALKKQRPLLIVAEDVESDALATLILN 296          

HSP 2 Score: 23.483 bits (49), Expect = 7.298e-23
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  218 DQRQGARMAIDALVGNLYSTTHHI 289
            D R+G ++A+D +V NL S    I
Sbjct:  146 DLRRGIKLAVDTVVTNLQSRARMI 169          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.608e-22
Identity = 61/135 (45.19%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++  KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EK+ S+      + E+   R+     +L++ ED+E+D LA+L+LN
Sbjct:  166 ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQ---RPLLIVSEDVESDALATLILN 296          

HSP 2 Score: 23.483 bits (49), Expect = 1.608e-22
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  218 DQRQGARMAIDALVGNLYSTTHHI 289
            D R+G  MA+D++V NL S    I
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMI 169          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.092e-22
Identity = 58/135 (42.96%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++  KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EK+ S+    + + ++  +       +L++ ED+E++ LA+L+LN
Sbjct:  166 ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISS---INAVVKVLELALKKQRPLLIVSEDVESEALATLILN 296          

HSP 2 Score: 23.483 bits (49), Expect = 2.092e-22
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  218 DQRQGARMAIDALVGNLYSTTHHI 289
            D R+G  MA+D++V NL S    I
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMI 169          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 56/135 (41.48%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +A   T  + EL++  GM LDRGY+SPYFITN KT++C L DP I+I +K+ +N      + ++  +       +L++ ED+E++ L +L++N
Sbjct:  168 ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTN---MHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIIN 298          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 55/135 (40.74%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +A   T  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I +K+ +N      + ++  +       +L++ ED+E++ L +L++N
Sbjct:  168 ARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTN---MHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIIN 298          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  273 AQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRR---YNGXDVLMIXEDIENDLLASLVLN 677
            A+ + S E++A  GT +ANGD+ IGE+IA A +K     +  +   KT  + EL +  GM  DRGYLSPYF+TN +     L DPYI+I EK+ S+      L  + PV       G  +L+I EDIE + LA+LV+N
Sbjct:  135 AKKVASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFVTNAEKMVAELEDPYILIHEKKLSS------LQPMLPVLEAVVQTGKPLLIIAEDIEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  225 DKGLEWQLMHLWEIYTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEK-GWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            DK +E  +  L ++  +Q +    +IA   T +ANGD+ IG+LIA AFEK G    + V  A+ T  ++E+    GM  DRGYLSPYF+TN  T E VL D YI+I +K+ S     DLL  +  V +  G  +L+I ED+E + LA+LV+N
Sbjct:  121 DKAVEVVVAELRKM--SQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEAKGTETTLEV--VEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKIS--AMKDLLPILEKVVQ-TGRPLLIIAEDVEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  264 IYTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPVRRYNGXDVLMIXEDIENDLLASLVLN 677
            I  A+ +++ +++A  GT +ANGD+ IGE+IA A +K     +  +   KT  + EL +  GM  DRGYLSPYFITN +     L DPYI+I EK+ S+      +  +       G  +L+I EDIE + LA+LV+N
Sbjct:  132 IARAKKVSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFITNAEKMVAELEDPYILIHEKKLSS---LQAMLPVLEAVVQTGKPLLIIAEDIEGEALATLVVN 265          
BLAST of CB611250 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = 3
Query:  225 DKGLEWQLMHLWEIYTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEK-GWGNNLHVLAARKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKRFSNCVFFDLLTEIGPV---RRYNGXDVLMIXEDIENDLLASLVLN 677
            DK +   ++ L +I  ++PI   ++IA  G  +AN D  IG+LIA+A EK G    + V  A+ T    EL++  GM  DRGYLSPYF+TN  + E VL +PYI+I +K+ SN      + E+ P+      +G  +L+I E+IE + LA+LV+N
Sbjct:  121 DKAVTGVIIELKKI--SRPIADKKEIAQVGCISANNDSEIGDLIAEAMEKVGKDGVITVEEAKGT--ETELKVVEGMQFDRGYLSPYFVTNADSMEAVLDEPYILIYDKKISN------MKELLPILEKTAQSGRPLLIIAEEIEGEALATLVVN 265          
The following BLAST results are available for this feature:
BLAST of CB611250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60A_ARATH5.610e-2345.93Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH60B_ARATH7.298e-2344.44Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH62_CUCMA1.608e-2245.19Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH61_CUCMA2.092e-2242.96Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH61_MAIZE1.905e-2041.48Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_MAIZE7.241e-2040.74Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60_METPB6.130e-1942.0360 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH60_RHOMR8.005e-1942.1160 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_METRJ1.366e-1839.8660 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH60_CHLT31.366e-1840.0060 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611250 ID=CB611250; Name=CB611250; organism=Citrus sinensis; type=EST; length=685bp
GGGGTTCGGTTTTGGTCAATCGAATTCCTCTGTCCTTTCTGCGCAACAAA
ATCACAAACGATGTTGGGCCATGCCTCTGACCTCGCCTCCGAAGTCAGGT
TCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAAGTCACTAAAAGAT
TTTTTGATTGCACCAATTCTAAAGTTAAAAGGGAGAATTTTATATGCGGG
AGGATGCGGAAGTGCCAGACCAAAGACAAGGGGCTAGAATGGCAATTGAT
GCACTTGTGGGAAATTTATACAGCACAACCCATCACATCATTCGAACAAA
TAGCCCTGTTTGGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAG
CTCATAGCCAAGGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTTTT
AGCTGCTCGGAAAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAA
TGACCCTAGACAGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAG
ACAAAAGAATGCGTTTTACGAGATCCTTATATCATGATCCTTGAGAAAAG
ATTTTCGAACTGCGTCTTCTTTGACTTATTGACAGAGATTGGACCAGTTA
GAAGATATAATGGCANAGATGTACTGATGATCNNTGAAGATATTGAAAAT
GATCTCCTAGCAAGTCTTGTCTTAAATGGAGTGGC
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