CB611251

Overview
NameCB611251
Unique NameCB611251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611251 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.729e-40
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 3
Query:  150 VARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAGEID 392
            +ARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRA EID
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEID 81          

HSP 2 Score: 29.261 bits (64), Expect = 1.729e-40
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  398 ELQKMLLNHKVRAH 439
            EL++MLLNHKVRAH
Sbjct:   84 ELREMLLNHKVRAH 97          
BLAST of CB611251 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.620e-16
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  150 VARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAGEID 392
            +ARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEID 89          

HSP 2 Score: 23.8682 bits (50), Expect = 2.620e-16
Identity = 9/13 (69.23%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  398 ELQKMLLNHKVRA 436
            EL++MLLNH+VR+
Sbjct:   92 ELREMLLNHRVRS 104          
BLAST of CB611251 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.745e-14
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  150 VARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAGEID 392
            +ARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEID 89          

HSP 2 Score: 21.9422 bits (45), Expect = 1.745e-14
Identity = 7/13 (53.85%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  398 ELQKMLLNHKVRA 436
            +L++M+LNH+VR+
Sbjct:   92 DLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB611251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.729e-4097.53Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.620e-1650.56Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.745e-1449.44Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIIaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIIaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611251 ID=CB611251; Name=CB611251; organism=Citrus sinensis; type=EST; length=616bp
GGGGAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTA
CTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACAT
CCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAG
TGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGAT
GGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCCTT
GGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTG
CGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATC
ACTGGGTACTACAGGCCGGAGAATCGGGCGGGCGAGATTGATCACCAGAG
CTTCAAAAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGT
GGCGCATAGCATCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAG
TGATGTTGTTACATTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTTG
TATTGATATCAACTGTTATTGACAACTTTTAATAGTACAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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