CF417096

Overview
NameCF417096
Unique NameCF417096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7870 contig Csv1_Contig7870:236..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.507e-102
Identity = 181/220 (82.27%), Postives = 205/220 (93.18%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPK 655
            F+ITTYSPTGV ITSSG+KKG+LFLADVNTQLKNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD+L ASYYH V+PL  TAVGAEV HSFSTN+N ITVGTQH LDPLT++KAR+NN G ASAL+QHEWRPK
Sbjct:   29 FSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPK 248          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.205e-96
Identity = 171/220 (77.73%), Postives = 203/220 (92.27%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPK 655
            FT+TTYS TGVAIT+SG KKGELFLADV+TQLKNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VNFS V G N ++LGTDLSFD+ +GNFTKCNAGLSF+++DLIASL LN+KGD+++ASYYH V P+  TAVGAE+THSFS+N+NT+T+GTQH+LDPLTT+KARVN+ G ASALIQHEWRPK
Sbjct:   29 FTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPK 248          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.239e-92
Identity = 167/223 (74.89%), Postives = 191/223 (85.65%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKVVV 664
            FTI+TYSPTGVAITSSGTKKGELFL DVNTQLKNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVNFS+VIGTN L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD L+ASYYH +NPL  TAVG +++H FST +NT T+GTQH LDPLTT+K RV N+G ASALIQHEWRPK ++
Sbjct:   29 FTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLI 251          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 322.013 bits (824), Expect = 1.744e-87
Identity = 163/220 (74.09%), Postives = 186/220 (84.55%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPK 655
            F+ITT+SP GVAITS+GTKKG+L L DV  Q + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD L ASYYH VNPL  TAVGAEV+H  S+ D+TITVGTQH LDPLT++KARVN+AGIASALIQHEW+PK
Sbjct:   29 FSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPK 248          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 7.583e-83
Identity = 147/218 (67.43%), Postives = 178/218 (81.65%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPK 655
            F++TTYS TGVAIT++GT KG LFL DV TQ+KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+ L ASYY  V+P T VGAE++H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQHEWRPK
Sbjct:   29 FSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPK 246          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 7.583e-83
Identity = 148/221 (66.97%), Postives = 182/221 (82.35%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKVV 661
            FT+TTY+  GVAIT++ TKK +L   ++ +Q+KNKNIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VN S+V GT  L++G D+S D+ +GN TK NAGLSF+N DLIASLNLNNKGDSL ASYYH VN   TAVGAE+THSFS+N+N++T GTQH LDPLT +KAR NN+G ASAL+QHEWRPK V
Sbjct:   28 FTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSV 248          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.480e-78
Identity = 144/220 (65.45%), Postives = 179/220 (81.36%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL-TAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPK 655
            FT+TTY+  G AIT++ TKK +L + ++ +Q+KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VN S   GT+ L++G D+S D+ + NF K NA LS+ N DLIASLNLNNKGDSL ASYYH V    TAVGAE+THSFS+N+N++T GTQH LDPLT +KAR+NN+G ASALIQHE+ PK
Sbjct:   28 FTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPK 247          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.636e-70
Identity = 130/224 (58.04%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    2 FTITTYSPTGVAITSSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFV--NPLTAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKVVV 664
            F +TT SP GVAIT++GT+K E    +++TQ+KNK +T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VN S   G+  LS+G D+SFD+ + +FTK NA LS  + DLIASL+LNN GD+L ASYYH V  +  TAVGAE++HS S N++T+  G+QH LDP TT+K R NN G+ASAL+QHEWRPK  V
Sbjct:   29 FCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFV 252          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 62/228 (27.19%), Postives = 98/228 (42.98%), Query Frame = 2
Query:    8 ITTYSPTGVAITSSGTKKGELFLADVNTQLKNK----NITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVP-----DQRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKV 658
            + T S TGV  T+SGT   +    + + + K K     +T   K +T + L T I + D+ A GLK  L+F         ++SGKV+  Y  +Y  +   V    A P ++ SAV+G      G  ++FDS     TK N  + +   D     N+N+ G   A S Y  V+        +  +   N     +  ++ LD    + A+VNN+ +         RP V
Sbjct:   30 VKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLK--LTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTLRPGV 254          
BLAST of CF417096 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 54/228 (23.68%), Postives = 108/228 (47.37%), Query Frame = 2
Query:    8 ITTYSPTGVAITSSG---TKKGELFLA-DVNTQLKNKNITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQ---RSGKVELQYLHDYAGISTSVGLTAN-PIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVTHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKVVV 664
            + T + +G+   ++G    + G++F + +   ++K+  +T   K +T + LFT + V D+   GLK  L      Q   ++GK ++ Y H+     + V +    P++N SAV+G      G   +FD++    T  N  L +   D +    +N+ G   + S +   +    VG +++ +  T++    +G ++ LD   +++A+VNNA       Q + R  V +
Sbjct:   30 LKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTL 256          
The following BLAST results are available for this feature:
BLAST of CF417096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC1_SOLTU2.507e-10282.27Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU1.205e-9677.73Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA5.239e-9274.89Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH1.744e-8774.09Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_ARATH7.583e-8367.43Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ7.583e-8366.97Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT1.480e-7865.45Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE5.636e-7058.04Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA2.843e-1327.19Voltage-dependent anion-selective channel protein ... [more]
VDAC_DROME7.003e-1223.68Voltage-dependent anion-selective channel OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-026 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C6 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417096 ID=CF417096; Name=CF417096; organism=Citrus sinensis; type=EST; length=671bp
GTTCACTATCACTACCTACTCTCCGACTGGAGTTGCTATTACATCATCTG
GAACAAAAAAGGGTGAGCTGTTTCTAGCTGATGTTAATACCCAGCTGAAG
AACAAGAATATCACAACTGATCTCAAAGTGGACACTGCCTCCAATCTTTT
CACAACTATCACTGTTGATGAACCTGCTCCTGGGCTGAAAACGATCCTAA
GCTTCAAAGTTCCAGATCAAAGGTCTGGCAAGGTTGAACTCCAGTATTTG
CATGATTATGCGGGGATAAGCACAAGTGTCGGCTTAACAGCGAATCCTAT
TGTTAACTTCTCGGCTGTGATTGGTACTAATGTTCTCTCTCTTGGTACTG
ATCTGTCATTTGACTCCAAATCTGGGAACTTCACTAAATGCAATGCTGGT
CTGAGCTTCAACAATGCCGACCTTATTGCTTCATTGAATTTGAACAACAA
AGGTGATTCCCTGGCTGCATCCTACTACCACTTTGTTAATCCCTTGACAG
CTGTTGGTGCAGAAGTAACCCATAGCTTCTCAACCAATGACAATACCATC
ACTGTTGGGACCCAGCACATATTAGATCCACTGACCACATTGAAGGCGCG
AGTGAACAATGCTGGCATTGCTAGTGCTCTCATCCAGCATGAGTGGCGTC
CCAAAGTCGTTGTTCACCATT
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