CF417102

Overview
NameCF417102
Unique NameCF417102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10376 contig Csv1_Contig10376:5..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417102 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.679e-39
Identity = 93/159 (58.49%), Postives = 110/159 (69.18%), Query Frame = 2 
Query:   56 MSLSIAS--TTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 526
            +SLSIA+  T  I       +    S+F+G++I+     R P   A          +VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F          LTVKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct:    2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158
[Close]
BLAST of CF417102 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 2 
Query:   53 TMSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLK 517
            TMSL+ AS    + P    ++ P + F  I++  +   R                 +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF          LTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL+
Sbjct:    3 TMSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLR 156
The following BLAST results are available for this feature:
BLAST of CF417102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH1.679e-3958.4950S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE1.798e-3351.6150S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-032 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417102 ID=CF417102; Name=CF417102; organism=Citrus sinensis; type=EST; length=650bp
CTGTTCACGAAGGCACATTGCTCACTCAACGCAGCGAAGCAGCCAAAAGA
TGACGATGAGTCTCTCAATTGCTTCGACAACAACAATCACTTTCCCAACA
GAGCCCTTCTCGAAAATTCCAAAGTCAACCTTTAACGGCATCCAAATTCG
TCAGTCGTGGCCTATTCGCACGCCGTTGCGTTTCGCGACTTCGTCGTCGG
GAAGCCGTGGTTCGTCGACAGTGGTTATGATGGCAAAGAGAGAAGAAGAA
ATGAAGGAAATTAGAGCCAAAACGACAGAGGAGATTAACGAAGAGGTCGT
TGATTTGAAGGGTGAGCTGTTTATGCTACGTCTTCAAAAATCAGTTCGCA
ATGAGTTCAAGTCTAGTGAATTTCGTCGTATGCGCAGAAGGATTGCTCGC
ATGCTTACTGTTAAACGTGAAAGAGAGCTTGAGGAAGGAATTAACAAGAG
ATTGTCCAGAAAGCTTGATCGACAATGGAAGAAAAGCATTGTAGTTAGAC
CACCTCCATCCTTGAAGAAGTTGCAAGAGGAAGAGGCGGCTGCAGAAGCT
GAGAAGTCTGCATGAGCCATCTATATACACTTTGCAAATAATTTGTTTTC
ATTTTTTTAAGTGAAAGCTCCTGAAATCATTGCAGATTTGCTGGCTCAAA
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