CF417112

Overview
NameCF417112
Unique NameCF417112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417112 vs. ExPASy Swiss-Prot
Match: VDE_SPIOL (Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 2.525e-44
Identity = 89/110 (80.91%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 NKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVE----KVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR 318
            NKFIRTDNTCGPEPPLVERLEK VEEGERTIIKEVEQLEGE+E    KVG+TEMTLFQRL EGF+ELQKDEE FL+EL+KEE +LL +LKMEA EVE LFGRALP++K+R
Sbjct:  363 NKFIRTDNTCGPEPPLVERLEKTVEEGERTIIKEVEQLEGEIEGDLEKVGKTEMTLFQRLLEGFQELQKDEEYFLKELNKEERELLEDLKMEAGEVEKLFGRALPIRKLR 472          
BLAST of CF417112 vs. ExPASy Swiss-Prot
Match: VDE_TOBAC (Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.086e-42
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 1
Query:    1 NKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR 318
            N FI+TDNTCGPEPPLVERLEKKVEEGERTIIKEVE++E EVEKV   E+TLF +L EGFKELQ+DEE FLRELSKEEMD+L  LKMEA+EVE LFGRALP++K+R
Sbjct:  373 NTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVRDKEVTLFSKLFEGFKELQRDEENFLRELSKEEMDVLDGLKMEATEVEKLFGRALPIRKLR 478          
BLAST of CF417112 vs. ExPASy Swiss-Prot
Match: VDE_ARATH (Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.929e-41
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    7 FIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEK----VGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR 318
            FIRTDNTCGPEP LVER+EK VEEGER I+KEVE++E EVEK    VGRTEMTLFQRLAEGF EL++DEE F+RELSKEEM+ L E+KMEASEVE LFG+ALP++K+R
Sbjct:  355 FIRTDNTCGPEPALVERIEKTVEEGERIIVKEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVRELSKEEMEFLDEIKMEASEVEKLFGKALPIRKVR 462          
BLAST of CF417112 vs. ExPASy Swiss-Prot
Match: VDE_LACSA (Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.024e-38
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    1 NKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEV----EQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR 318
            N FI TDN+CGPEPPLVERLEK  EEGE+ +IKE     E++E EVEKV  TEMTLFQRL EGFKELQ+DEE F+RELSKEE ++L+EL+MEA+EVE LFGRALP++K+R
Sbjct:  364 NNFITTDNSCGPEPPLVERLEKTAEEGEKLLIKEAVEIEEEVEKEVEKVRDTEMTLFQRLLEGFKELQQDEENFVRELSKEEKEILNELQMEATEVEKLFGRALPIRKLR 473          
The following BLAST results are available for this feature:
BLAST of CF417112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VDE_SPIOL2.525e-4480.91Violaxanthin de-epoxidase, chloroplastic OS=Spinac... [more]
VDE_TOBAC3.086e-4279.25Violaxanthin de-epoxidase, chloroplastic OS=Nicoti... [more]
VDE_ARATH9.929e-4175.93Violaxanthin de-epoxidase, chloroplastic OS=Arabid... [more]
VDE_LACSA6.024e-3870.91Violaxanthin de-epoxidase, chloroplastic OS=Lactuc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-042 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417112 ID=CF417112; Name=CF417112; organism=Citrus sinensis; type=EST; length=475bp
AACAAGTTCATCAGAACAGATAATACTTGTGGACCAGAGCCTCCCCTTGT
AGAGAGACTTGAGAAAAAGGTGGAAGAAGGAGAGAGGACAATCATAAAGG
AGGTAGAACAACTAGAAGGTGAGGTGGAGAAGGTTGGAAGAACTGAAATG
ACTTTGTTTCAGAGGTTGGCAGAAGGGTTCAAAGAGCTTCAAAAAGATGA
GGAGAAATTCTTGAGAGAGCTAAGTAAAGAAGAAATGGATCTGTTAAGTG
AGCTGAAAATGGAAGCAAGCGAGGTAGAAAATCTTTTTGGACGAGCTTTG
CCAGTTAAGAAGATAAGATAGAACTCAATTTAGTATCTTATTAATTTTTT
AAAACTGTACAGCAATTCAGTCAAATCTTTTGAATTAATTCTTTCAGATA
TAGTGCTTTTAATTCCATCAGATATCTTTCCTCTGTATTTTCCAAAAAAC
AAAACAAAAAAGGTATCTTTCTTCT
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