CF417117

Overview
NameCF417117
Unique NameCF417117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6197 contig Csv1_Contig6197:335..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.846e-53
Identity = 107/204 (52.45%), Postives = 137/204 (67.16%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAI 614
            V+VLRVDKEKGYIDLSKRRVS ED+  CEER+NKSK VHSIMRH+AE   + LE +Y  IGWPLY KYGHA++AFK+ +++PD V   L                  P  +  + D L+  I RR+TPQP+KIRADVE+ CF ++G+  IK A++ AE     + P+K+KLVAPPLYVL T  LDK  G+  L +AI A  ++I
Sbjct:   71 VVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGLE-----------------PPKSGVIND-LLAQISRRLTPQPIKIRADVEVTCFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSI 256          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_YEAST (Eukaryotic translation initiation factor 2 subunit alpha OS=Saccharomyces cerevisiae GN=SUI2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 106/205 (51.71%), Postives = 131/205 (63.90%), Query Frame = 3
Query:    6 MVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            +VLRVDKEKGYIDLSKRRVS EDI  CEE+Y KSK VHSI+R+ AE   I LEELY  I WPL  K+GHA+EAFK+ + D                   + V + I   +++V D L   I +R+TPQ +KIRADVE+ CF ++G+  IKDA++ AE        VK+KLVA PLYVLTT  LDK++GI  L  AI   TE I K
Sbjct:   72 VVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID-------------------ETVWEGIEPPSKDVLDELKNYISKRLTPQAVKIRADVEVSCFSYEGIDAIKDALKSAEDMSTEQMQVKVKLVAAPLYVLTTQALDKQKGIEQLESAIEKITEVITK 257          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.278e-42
Identity = 94/214 (43.93%), Postives = 134/214 (62.62%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE LY    W    KY      A++AFK  V+DPD VL+ L                    + E+ +  L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +KDA+R   +    + P+KI L+APP YV+TT TL++ +G+SVLN+A++   E IE+
Sbjct:   71 VVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGLD-------------------LNEDERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKDALRAGLSCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMSVIKERIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_CHICK (Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus gallus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.278e-42
Identity = 95/214 (44.39%), Postives = 135/214 (63.08%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP ++L+SL                    +TEE +  L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R        + P+KI L+APP YV+TT TL++ +G+SVLN+A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-AILDSLD-------------------LTEEERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.241e-41
Identity = 94/214 (43.93%), Postives = 134/214 (62.62%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R          P+KI L+APP YV+TT TL++ +G+SVLN+A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.241e-41
Identity = 94/214 (43.93%), Postives = 134/214 (62.62%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R          P+KI L+APP YV+TT TL++ +G+SVLN+A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.241e-41
Identity = 94/214 (43.93%), Postives = 134/214 (62.62%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R          P+KI L+APP YV+TT TL++ +G+SVLN+A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.766e-41
Identity = 93/214 (43.46%), Postives = 135/214 (63.08%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R        + P+KI L+APP YV+TT TL++ +G+SVL++A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.766e-41
Identity = 93/214 (43.46%), Postives = 135/214 (63.08%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL                    + E+ ++ L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +K+A+R        + P+KI L+APP YV+TT TL++ +G+SVL++A+A   E IE+
Sbjct:   71 VVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSLD-------------------LNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEE 264          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.612e-41
Identity = 91/214 (42.52%), Postives = 135/214 (63.08%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       L+ L+    W    KY      A++AFK  V+DPD +             DG +++       E+ +  L+ NI RR+TPQ +KIRAD+E+ C+ ++G+  +KDA+R   +    + P+KI L+APP YV+TT TL++ +G+SVLN+A++   E IE+
Sbjct:   71 VVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLDYTKDEQLDSLFQRTAWVFDEKYKKPGYGAYDAFKNAVSDPDIL-------------DGLDLS-------EDERRVLIDNINRRLTPQAVKIRADIEVACYGYEGIDAVKDALRAGLSCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMSVIKERIEE 264          
The following BLAST results are available for this feature:
BLAST of CF417117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IF2A_SCHPO1.846e-5352.45Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_YEAST2.759e-4951.71Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR7.278e-4243.93Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_CHICK7.278e-4244.39Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT1.241e-4143.93Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE1.241e-4143.93Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_BOVIN1.241e-4143.93Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB2.766e-4143.46Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN2.766e-4143.46Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENLA3.612e-4142.52Eukaryotic translation initiation factor 2 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-047 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_E7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417117 ID=CF417117; Name=CF417117; organism=Citrus sinensis; type=EST; length=622bp
CCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGGTTACATTGATTTGAGT
AAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCTGTGAGGAGAGGTACAA
CAAGAGCAAGCTCGTTCACTCTATCATGCGACACGTGGCTGAGACTTTGG
GCATCGATTTAGAGGAACTGTATGTCAATATTGGCTGGCCCTTGTACTGG
AAATATGGTCATGCTTTTGAGGCATTCAAAATCATTGTTACTGATCCTGA
TTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAAGAAATTGGCCCTGATG
GACAGGAGGTAACTAAGGTGATTCCTGCTGTGACGGAGGAAGTGAAAGAT
GCTTTGGTAAAAAATATTAGGAGAAGAATGACCCCACAGCCATTGAAGAT
TCGAGCTGACGTTGAAATGAAATGCTTCCAGTTTGATGGAGTTCTTCATA
TAAAGGATGCCATGCGGAAAGCTGAGGCTGCTGGCAACAATGACTGCCCT
GTGAAAATCAAATTGGTTGCTCCCCCCTTGTATGTGCTTACCACTCANAC
CCTTGACAAGGAGCAAGGGATCTCAGTTCTCAATAAAGCAATTGCGGCTT
GCACTGAAGCTATAGAGAAGCA
back to top