CF417173

Overview
NameCF417173
Unique NameCF417173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10785 contig Csv1_Contig10785:1185..1607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417173 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.812e-33
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 2 
Query:    2 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 229
            AWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:  326 AWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
[Close]
BLAST of CF417173 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 2 
Query:    2 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 205
            A+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct:  330 AYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397
[Close]
BLAST of CF417173 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:    2 AWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 205
            A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L   EM LKD G  +KLGSG  AA+ Y   N
Sbjct:  322 AYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 389
The following BLAST results are available for this feature:
BLAST of CF417173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SGAT_ARATH1.812e-3389.47Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA3.668e-1867.65Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME3.433e-1661.76Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-103 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417173 ID=CF417173; Name=CF417173; organism=Citrus sinensis; type=EST; length=423bp
GGCATGGCAGAGATACAATCTAAGCTTAGGTCTGGGCCTTAACAAAGTTG
CTGGTAAAGTATTTAGAATCGGGCATCTCGGCCACCTGAATGAGTTGCAA
TTGTTGGGCTGTCTCGCTGGTGTGGAGATGATACTAAAAGACGTGGGCTA
CCCGGTTAAGCTGGGAAGCGGGGTTGCAGCTGCTTCTGCATACCTACAGA
ACAACATTCCTATGATCCCATCCAGGATCTGAGTCATCTTTCATCAATGT
AATTACTTCTCTTCTATTCACGCGCTTCAGGTCACTATGTACAAAGAATG
TAAAATTTCCTATGCTTGCTCTTATTAGAGGCTCACCGAGAAAACTCTCC
TTTAATCATTGCTTCTTGTATTGTGATGTACTTGAAACGTCTTATTAGTC
CAGCCAAGTATTTTATTTTTTCT
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