CF417174

Overview
NameCF417174
Unique NameCF417174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig439 contig Csv1_Contig439:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417174 vs. ExPASy Swiss-Prot
Match: YHG9_YEAST (UPF0673 membrane protein YHR009C OS=Saccharomyces cerevisiae GN=YHR009C PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 7.434e-13
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:  385 PVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 498
            P+IGE   +K  Y+ +GH+CWGI N PATG  +AE+++
Sbjct:  463 PLIGET-NVKDLYIASGHSCWGINNAPATGKLMAEILL 499

HSP 2 Score: 46.9802 bits (110), Expect = 7.434e-13
Identity = 38/126 (30.16%), Postives = 63/126 (50.00%), Query Frame = 3 
Query:    3 LGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCG----MSSEQEVPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQACFLP 365
            +GPW+ K   +     +SGL+AHS+ ++P E   ++P+A+         E      PE+Y R   EVY+CG    + +  E  DD E VS     +   + +++ T+S     +  +  +QACFLP
Sbjct:  341 MGPWTSK---ILKDCPISGLRAHSVTIKPSE-KTVSPYAILAELKVNDREF---FSPEMYAR-KDEVYVCGEGDTLVNIPESSDDVEVVSEKCDELYHYVSKLSPTLS-----KGHLLRKQACFLP 453
The following BLAST results are available for this feature:
BLAST of CF417174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YHG9_YEAST7.434e-1350.00UPF0673 membrane protein YHR009C OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-104 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417174 ID=CF417174; Name=CF417174; organism=Citrus sinensis; type=EST; length=677bp
CGCTTGGGCCGTGGTCTGGTAAATTTGAATTGTTGGCTTCCATGTTCAGA
GTGTCTGGTCTCAAGGCTCATAGTATCATTTTGGAGCCGAAAGAGGCTGA
TGCCATAACCCCCCATGCACTGTTTTTGAGTTATTATCCGGCTCAGGGAG
AGGGTGGCAAGCCTATGGACCCTGAAGTGTATCCTCGCCCTACTGGGGAG
GTTTACTTGTGTGGGATGTCATCTGAGCAAGAAGTTCCAGATGATCCAGA
AACAGTTTCAGGAGATCCTGCATCTATACAGGTGCTAAAGAGGGTGGCTA
GGACAGTGTCAAGCCATTTAGGGGAAGAGGCACAAGTGAAGGCAGAGCAA
GCATGTTTCCTGCCATGTACTGGATGATGGTGTGCCTGTAATAGGCGAAC
TTCCAGGTATTAAAGGTTGTTACGTGGGTACTGGGCATAATTGCTGGGGT
ATTCTAAATGGTCCAGCCACTGGGGCTGCTCTGGCTGAGCTTGTGATGGG
ATGGTTGTGCTAGCATTGTCGATCTTAGTCGCTTTAGTCCTGCAAGATTC
GGTCGGCCGTCGGCGTANACAAAATCTATAGACATAATTTGGTAGAAGGT
GATTGATGAGAATAATGNTGTGATCATTGTAACCACTTGGCAAAATAATA
AGTTTTAGGCCCGCCCATTTAATCGTG
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