CF417175

Overview
NameCF417175
Unique NameCF417175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:1..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 2.164e-118
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 621
            FVKERRAMKREYEEFKVRINALVAKAQK+PEEGWTMQDGTPWPGNN RDHPGMIQVFLG SGGLDTDGNELPRL+YVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKA+KEAMCFMMDPA GKK CYVQFPQRFDGIDLHDRYANRNIVFFDIN+KGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE
Sbjct:  448 FVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLIYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKAIKEAMCFMMDPAIGKKCCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 654
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 9.091e-117
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 621
            FVKERRAMKREYEEFKVRIN LVAKAQK+PE+GWTM+DGT WPGNNPRDHPGMIQVFLG SGGLDTDGNELPRL+YVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKA+KEAMCFMMDPA GKK CYVQFPQRFDGIDLHDRYANRN VFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE
Sbjct:  435 FVKERRAMKREYEEFKVRINILVAKAQKIPEDGWTMEDGTSWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLIYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKAIKEAMCFMMDPAIGKKCCYVQFPQRFDGIDLHDRYANRNTVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 641
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 9.091e-117
Identity = 197/207 (95.17%), Postives = 202/207 (97.58%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 621
            FVKERRAMKREYEEFKVRINALVAKAQK+PEEGWTM DGT WPGNNPRDHPGMIQVFLG SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFN+SKAL+EAMCFMMDPA G+KTCYVQFPQRFDGIDLHDRYANRNIVFFDIN+KGLDGIQGPVYVGTGCCFNRQALYGYDPVLTE DLE
Sbjct:  445 FVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLE 651
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 9.091e-117
Identity = 197/207 (95.17%), Postives = 202/207 (97.58%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLE 621
            FVKERRAMKREYEEFKVRINALVAKAQK+PEEGWTM DGT WPGNNPRDHPGMIQVFLG SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFN+SKAL+EAMCFMMDPA G+KTCYVQFPQRFDGIDLHDRYANRNIVFFDIN+KGLDGIQGPVYVGTGCCFNRQALYGYDPVLTE DLE
Sbjct:  445 FVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTMADGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALREAMCFMMDPALGRKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLE 651
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 1.778e-104
Identity = 173/204 (84.80%), Postives = 190/204 (93.14%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEE 612
            FVK+RRAMKREYEEFKVR+NALVAKAQK+PEEGW MQDGTPWPGNN RDHPGMIQVFLG SGGLDT+GNELPRLVYVSREKRPGFQHHKKAGAMNAL+RVSAVLTNG YLLN+DCDHY NNSKAL+EAMCF+MDP  G++ CYVQFPQRFDGID +DRYANRN VFFDINL+GLDG+QGPVYVGTGC FNR ALYGY+P + ++
Sbjct:  442 FVKDRRAMKREYEEFKVRVNALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPIKQK 645
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 1.778e-104
Identity = 173/204 (84.80%), Postives = 190/204 (93.14%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEE 612
            FVK+RRAMKREYEEFKVR+NALVAKAQK+PEEGW MQDGTPWPGNN RDHPGMIQVFLG SGGLDT+GNELPRLVYVSREKRPGFQHHKKAGAMNAL+RVSAVLTNG YLLN+DCDHY NNSKAL+EAMCF+MDP  G++ CYVQFPQRFDGID +DRYANRN VFFDINL+GLDG+QGPVYVGTGC FNR ALYGY+P + ++
Sbjct:  442 FVKDRRAMKREYEEFKVRVNALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPIKQK 645
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.323e-104
Identity = 174/204 (85.29%), Postives = 188/204 (92.16%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEE 612
            FV+ERRAMKREYEEFKVRINALVAKAQK+PEEGWTMQDGTPWPGNN RDHPGMIQVFLG+SGG D +GNELPRLVYVSREKRPG+ HHKKAGAMNAL+RVSAVLTN  Y+LN+DCDHY NNSKA+KEAMCFMMDP  GKK CYVQFPQRFDGID HDRYANRN+VFFDIN+KGLDGIQGP+YVGTGC F RQALYGYD   T++
Sbjct:  452 FVRERRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDIEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKK 655
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.033e-104
Identity = 173/198 (87.37%), Postives = 185/198 (93.43%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYD 594
            FV+ERRAMKREYEEFKVRINALVAKAQK+PEEGWTMQDGTPWPGNN RDHPGMIQVFLG+SGG D +GNELPRLVYVSREKRPG+ HHKKAGAMNAL+RVSAVLTN  Y+LN+DCDHY NNSKA+KEAMCFMMDP  GKK CYVQFPQRFDGID HDRYANRN+VFFDIN+KGLDGIQGP+YVGTGC F RQALYGYD
Sbjct:  451 FVRERRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYD 648
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.033e-104
Identity = 173/198 (87.37%), Postives = 185/198 (93.43%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYD 594
            FV+ERRAMKREYEEFKVRINALVAKAQK+PEEGWTMQDGTPWPGNN RDHPGMIQVFLG+SGG D +GNELPRLVYVSREKRPG+ HHKKAGAMNAL+RVSAVLTN  Y+LN+DCDHY NNSKA+KEAMCFMMDP  GKK CYVQFPQRFDGID HDRYANRN+VFFDIN+KGLDGIQGP+YVGTGC F RQALYGYD
Sbjct:  451 FVRERRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDVEGNELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYD 648
[Close]
BLAST of CF417175 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 6.758e-104
Identity = 173/204 (84.80%), Postives = 188/204 (92.16%), Query Frame = 1 
Query:    1 FVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEE 612
            FVK+RRAMKREYEEFKVRIN LVAKAQK+PEEGW MQDGTPWPGNN RDHPGMIQVFLG SGGLDT+GNELPRLVYVSREKRPGFQHHKKAGAMNAL+RVSAVLTNG Y+LN+DCDHY NNSKAL+EAMCF+MDP  G+  CYVQFPQRFDGID +DRYANRN VFFDINL+GLDGIQGPVYVGTGC FNR ALYGY+P + ++
Sbjct:  449 FVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGQYMLNLDCDHYINNSKALREAMCFLMDPNLGRSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKQK 652
The following BLAST results are available for this feature:
BLAST of CF417175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA1_ARATH2.164e-11896.14Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH9.091e-11794.69Probable cellulose synthase A catalytic subunit 10... [more]
CESA1_ORYSJ9.091e-11795.17Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI9.091e-11795.17Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA2_ORYSJ1.778e-10484.80Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI1.778e-10484.80Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA3_ORYSJ2.323e-10485.29Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA5_ORYSJ3.033e-10487.37Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI3.033e-10487.37Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA8_ORYSJ6.758e-10484.80Probable cellulose synthase A catalytic subunit 8 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-105 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C6 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417175 ID=CF417175; Name=CF417175; organism=Citrus sinensis; type=EST; length=622bp
TTTGTGAAAGAGCGTCGGGCAATGAAGAGAGAATATGAGGAGTTCAAGGT
GCGTATCAATGCCCTTGTTGCCAAGGCACAAAAGATGCCTGAAGAAGGTT
GGACAATGCAGGATGGCACGCCCTGGCCAGGGAATAATCCTAGGGATCAT
CCTGGAATGATCCAGGTGTTCTTAGGCCGCAGTGGAGGGCTTGACACTGA
TGGAAATGAGTTACCTAGACTTGTTTATGTCTCTCGAGAGAAGCGTCCTG
GTTTCCAACATCACAAAAAAGCTGGGGCTATGAATGCATTGATTCGTGTT
TCAGCTGTCCTTACAAATGGTGCATATCTGTTGAATGTTGATTGTGATCA
TTACTTCAATAACAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGG
ATCCTGCCTATGGAAAGAAGACTTGCTATGTGCAGTTCCCACAACGTTTT
GATGGTATTGACTTGCATGATCGATATGCCAATCGTAATATTGTTTTCTT
TGATATCAACTTGAAAGGGCTGGATGGCATTCAGGGTCCAGTCTATGTGG
GAACTGGTTGTTGTTTCAACAGGCAAGCTCTGTATGGGTATGATCCAGTT
TTAACTGAGGAAGATTTGGAAC
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