CF417177

Overview
NameCF417177
Unique NameCF417177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:52..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:   74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            G+AV L+P+  E+    + +MRKT SKSVSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG       L  +P T +   ++  + S W  L GALG
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHSRWAML-GALG 101

HSP 2 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAV
Sbjct:   73 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV 119
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 113

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 131
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:   74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG       L  +P T +   ++  + S W  L GALG
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHSRWAML-GALG 109

HSP 2 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAV
Sbjct:   81 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV 127
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 112

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 130
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 63/109 (57.80%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 113

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 131
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 112

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 130
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 62/107 (57.94%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 111

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 129
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 111

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 129
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.340e-27
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  + S W  L GALG
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFARNRELEVIHSRWAML-GALG 112

HSP 2 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   84 GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 130
[Close]
BLAST of CF417177 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALG 388
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAG       L  +P T +   ++  +   W  L GALG
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG-------LSADPETFAKNRELEVIHCRWAML-GALG 113

HSP 2 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  279 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 419
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 131
The following BLAST results are available for this feature:
BLAST of CF417177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CB21_CUCSA2.301e-2860.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_TOBAC5.127e-2858.72Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_SOYBN6.696e-2862.86Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_TOBAC6.696e-2858.72Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC1.492e-2757.80Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_NICPL1.492e-2757.80Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC1.948e-2757.94Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC3.323e-2757.94Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_ARATH4.340e-2758.33Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_TOBAC5.669e-2756.88Chlorophyll a-b binding protein 50, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-107 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417177 ID=CF417177; Name=CF417177; organism=Citrus sinensis; type=EST; length=419bp
TTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCA
GGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGT
ACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTC
CCTGGCGACTACGGTTGGGACACAGCCGGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCGTA
back to top