CF417185 | Citrus Genome Database

Overview


Name	CF417185
Unique Name	CF417185
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	595

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6048	contig	Csv1_Contig6048:12..602.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.058e-23
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MKV+AA+LLA+LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE+LASVPSG
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSG 68

HSP 2 Score: 21.557 bits (44), Expect = 1.058e-23
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            D+++GFSLFD
Sbjct:  103 DEELGFSLFD 112

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.692e-23
Identity = 49/68 (72.06%), Postives = 62/68 (91.18%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MKV+AAYLLAVLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE+L+SVPSG
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 6.692e-23
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            D+DMGFSLFD
Sbjct:  104 DEDMGFSLFD 113

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 8.709e-23
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MKVVAAYLLAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKLASVPSG
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 8.709e-23
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGFSLF+
Sbjct:  106 DDDMGFSLFE 115

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.919e-22
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MKVVAA+LLAVL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKLASVPSG
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 1.919e-22
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGFSLF+
Sbjct:  106 DDDMGFSLFE 115

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.930e-22
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MKV AA+LLAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGREKLASVPSG
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 1.930e-22
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGFSLF+
Sbjct:  102 DDDMGFSLFE 111

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.917e-21
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MK VAAYLLAVL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GREK ASVP G
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCG 68

HSP 2 Score: 25.7942 bits (55), Expect = 5.917e-21
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGFSLFD
Sbjct:  103 DDDMGFSLFD 112

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.808e-20
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            M+ VAAYLLAVLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL+S+PSG
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKLSSMPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 4.808e-20
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGF LFD
Sbjct:  107 DDDMGFGLFD 116

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.149e-19
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MK +AAYLL  LGGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKLASVPSG
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSG 68

HSP 2 Score: 22.7126 bits (47), Expect = 5.149e-19
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            D+DMGF LFD
Sbjct:  104 DEDMGFGLFD 113

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.499e-18
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MK +AAYLL  LGGNTSPSA D+K +L SVG D +++RL  L+SE++GKDI +LIA G EKLASVPSG
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKLASVPSG 68

HSP 2 Score: 22.7126 bits (47), Expect = 1.499e-18
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            D+DMGF LFD
Sbjct:  100 DEDMGFGLFD 109

[Close]

BLAST of CF417185 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.929e-18
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1

Query:   28 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSG 231
            MK +AA+LL  L GN+SPSA+DIK +L SVG D ++ RL  LL E++GKDI ELI+SG EKLASVPSG
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKLASVPSG 68

HSP 2 Score: 24.2534 bits (51), Expect = 1.929e-18
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2

Query:  338 DDDMGFSLFD 367
            DDDMGF LFD
Sbjct:  102 DDDMGFGLFD 111

The following BLAST results are available for this feature:

BLAST of CF417185 vs. ExPASy Swiss-Prot

BLAST of CF417185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37


Match Name	E-value	Identity	Description
RLA2_PARAR	1.058e-23	76.47	60S acidic ribosomal protein P2 OS=Parthenium arge...	[more]
RLA2B_MAIZE	6.692e-23	72.06	60S acidic ribosomal protein P2B OS=Zea mays GN=RP...	[more]
RLA22_ARATH	8.709e-23	76.47	60S acidic ribosomal protein P2-2 OS=Arabidopsis t...	[more]
RLA21_ARATH	1.919e-22	75.00	60S acidic ribosomal protein P2-1 OS=Arabidopsis t...	[more]
RLA24_ARATH	1.930e-22	75.00	60S acidic ribosomal protein P2-4 OS=Arabidopsis t...	[more]
RLA2A_MAIZE	5.917e-21	69.12	60S acidic ribosomal protein P2A OS=Zea mays GN=RP...	[more]
RLA2_BRAFL	4.808e-20	67.65	60S acidic ribosomal protein P2 OS=Branchiostoma f...	[more]
RLA2_ALTAL	5.149e-19	67.65	60S acidic ribosomal protein P2 OS=Alternaria alte...	[more]
RLA2_FUSCU	1.499e-18	66.18	60S acidic ribosomal protein P2 OS=Fusarium culmor...	[more]
RLA2_CLAHE	1.929e-18	64.71	60S acidic ribosomal protein P2 OS=Cladosporium he...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-115 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_D5 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417185 ID=CF417185; Name=CF417185; organism=Citrus sinensis; type=EST; length=595bp
ATCCAGAGCCTCCCAGAGAAAGAAGAAATGAAGGTGGTGGCAGCATATCT
GTTGGCTGTTTTGGGAGGAAACACCAGCCCTTCCGCCGATGATATTAAGG
GAATCCTTGGCTCTGTTGGAGCTGATTGCGAGGACAATAGGCTTGAGCTC
CTTCTATCAGAAGTTAAAGGCAAAGACATAACTGAGCTTATTGCATCTGG
GCGGGAGAAATTGGCCTCAGTGCCTTCTGGGTGGTGGAGTTGCAGTTGCT
GCTGCTCCATCTGCCGGTGGTGCAGGCGCTGCCCCAGCTGCTGCTGAGGC
CAAGAAAGAGGAGAAAGTGGAGGAGAAAGAAGAATCTGATGATGATATGG
GTTTCAGTCTTTTCGACTAGAGAGCTCTTCAGCATTTTTTTCACCTCTTT
CTCCTCAATTGGGGAGCTTCTAACTGGACTTAAAAGTTTTGTTATTTTNG
GAGTTCTGTAGTTTTTAGTTTATATAATCCTTNANATGAAACTTTTGACG
GGTTAAGTTGTGGCTCCATATTGATATGCTGCTTTGTTATGCCTGNTCAG
AGATTTATATATCTGGCAACTATCATTTTCTATTATTTCATCATA