CF417189

Overview
NameCF417189
Unique NameCF417189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:121..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417189 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.965e-21
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   67 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDVEAAVAKAV 396
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D EAAVAKAV
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAV 120

HSP 2 Score: 25.0238 bits (53), Expect = 5.965e-21
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  462 GKVKDPYGFTWL 497
            GKV DP+G TW+
Sbjct:  140 GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CF417189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH5.965e-2150.89Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-119 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417189 ID=CF417189; Name=CF417189; organism=Citrus sinensis; type=EST; length=690bp
GTTTCTTTCCTTTGTCTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGA
TGTCCAGGAGGTTCAGAATGGAGCTGCGCCGGAGAAGGCTCCTGCTACCG
TGGCCAGCTTCACGGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAG
GCTACTGACGCTGTTCAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGAT
CGGCCGTAGCGTGGAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCA
TCTCCTGCGCTCAACTCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGAC
GTTTCCGGTGACTCTGCTGCTGCACAGACCGTGGGGACCGGATGCGTGCT
TTGCTTGGAGACCGAGGACGTGGAGGCTGCCGTCGCCAAGGCTGTGATGC
TGGAGCTGTTGCTGAGGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGTG
GAGAGCGCGTGGGAAAGGTCAAAGATCCTTATGGCTTCACTTGGCTCATT
TGCTCCCCGGTCAAGAAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCGGA
TCTGATCTTTNGATATTGATCTACTATCACATAACTCTCTTTTGTCGTTC
GTCTTTACTGCTGTGGGTTTATAGCTCTAGGCTCTTTTANTATTTCGGAT
ATCTTGATGATATTGCTGAACGTTGATCGTGATGATGGAT
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