CF417194

Overview
NameCF417194
Unique NameCF417194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10948 contig Csv1_Contig10948:140..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.171e-27
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AARDSSG LSPF F RRETG++DV  KVLYCGICH+DL  +KNEWGFS +P+VPGHEI GEVTEVGSKV++ K
Sbjct:   15 AARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFK 87          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.424e-26
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKR 215
            AARDSSGHLSPF FSRR+TG+E+VR+KVLYCGICH+DL  +KNEW  S +P+VPGHEI GEV+E+G+KV +
Sbjct:   18 AARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSK 88          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.869e-25
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AA+D+SG LSPF F+RRETG++DVR KVL+CGICH+DL  +KNEWG S +P+VPGHEI G VTEVG+KV + K
Sbjct:   13 AAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFK 85          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.869e-25
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AARDSSGHLSPF  SRR TGD+DV +K+L+CGICH+DL  IKNEW  S +P+VPGHEIAG VTEVG  V R K
Sbjct:   20 AARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFK 92          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.441e-25
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKR 215
            AA+D SG LSPF FSRR TG++DVR KVL+CGICHTDLS  KNEWG + +P+VPGHEI G VTEVG+KVK+
Sbjct:   13 AAKDESGILSPFSFSRRATGEKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVPGHEIVGVVTEVGAKVKK 83          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.438e-25
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AARD++G LSPFKFSRR TG++DVRLKVL+CG+CH+D   I N WGF+ +P+VPGHEI G VTEVGSKV+++K
Sbjct:   17 AARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVK 89          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.277e-25
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AARD+SG LSPF FSRRE GD+DV +K+LYCG+CH+DL  +KN+WGF+ +P+VPGHEI G VT+VG  VK+ +
Sbjct:   17 AARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFR 89          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.269e-24
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AARD+SG LSP KFSRR TG++DV  KVLYCGICH+DL  IKNEWG + +P +PGHEI G VTEVG+KV+  K
Sbjct:   18 AARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFK 90          

HSP 2 Score: 23.483 bits (49), Expect = 1.269e-24
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  257 ACHSCESCANDL 292
            +C SCESC N L
Sbjct:  103 SCRSCESCENHL 114          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.525e-24
Identity = 46/73 (63.01%), Postives = 61/73 (83.56%), Query Frame = 3
Query:    3 AARDSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            AA+D+SGHLSPF F+RR+   +DV LK+LYCG+CH+DL  +KN+WGF+ +P+VPGHEIAG VT+VGS V + K
Sbjct:   10 AAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFK 82          
BLAST of CF417194 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.013e-24
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 3
Query:   27 LSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGFSXFPMVPGHEIAGEVTEVGSKVKRLK 221
            LSPFKFSRR TGD DVR KVLYCG+CH+DL  +KNEWG + +P+VPGHEI G VTEVGSKV++ K
Sbjct:    2 LSPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFK 66          
The following BLAST results are available for this feature:
BLAST of CF417194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MTDH_FRAAN1.171e-2775.34Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH6_ARATH6.424e-2671.83Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH8_ARATH1.869e-2568.49Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH3_ORYSJ1.869e-2571.23Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH7_ARATH2.441e-2571.83Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH_APIGR5.438e-2568.49Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH_MEDSA9.277e-2564.38Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_MESCR1.269e-2468.49Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH1_STYHU3.525e-2463.01Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_PETCR6.013e-2472.31Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-124 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_E5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417194 ID=CF417194; Name=CF417194; organism=Citrus sinensis; type=EST; length=292bp
GGGCAGCCCGAGACAGCTCCGGCCATCTCTCCCCATTCAAATTCTCCAGA
AGGGAAACGGGTGATGAGGATGTGAGGCTGAAGGTATTGTATTGTGGGAT
CTGCCATACTGATCTCTCCAACATCAAGAATGAATGGGGCTTCTCTCNCT
TCCCTATGGTTCCTGGGCATGAAATTGCAGGGGAAGTGACAGAAGTTGGT
AGCAAAGTAAAAAGGTTAAAGNGGGAGATAAAGTTGGAGTTGGATGCATG
GTCGGTGCATGCCACAGCTGCGAGAGCTGTGCCAATGACTTG
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