CF417197

Overview
NameCF417197
Unique NameCF417197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417197_ssr2 microsatellite CF417197_ssr2:2..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2548 contig Csv1_Contig2548:133..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417197 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.157e-15
Identity = 56/166 (33.73%), Postives = 77/166 (46.39%), Query Frame = 2 
Query:  173 EERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDV------------VFGCPPSTDXXXXXXXXXXXXFETLAM--CE------VVEDADCKTQASS-----LIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCIF 592
            E R   +S   TAS  +     +F  EA     FR+ P PLPYD               G   S +             E+  +  C+       + D D K + SS     ++ S  KS ++   N++  SE+ED CP CLEEY +ENPK++TKC HHFHLSCI+
Sbjct:   49 ETRSLPSSVQATASITSSSSHDNFLSEA-----FRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIY 209

HSP 2 Score: 28.4906 bits (62), Expect = 1.157e-15
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  594 EWNERSESCPIC 629
            EW ERSE+CP+C
Sbjct:  210 EWMERSENCPVC 221
The following BLAST results are available for this feature:
BLAST of CF417197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH1.157e-1533.73E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-127 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_E8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417197 ID=CF417197; Name=CF417197; organism=Citrus sinensis; type=EST; length=689bp
GTCTTCTTCTTCTTCTCTCTCTGTGTTCCCCAAGAGGAAATAATGCACCA
ACTGCTGCTTTGTGTTGGGTGGATAACAGAATAAAGTGCAGGGAATGGGA
GGCTGTTGTTGTTCTTCCAGGAAACCTCATCTGCATGGAACGCCTGTTTA
CTACTATTGTCCACCAGCTCTGGAAGAGCGGGAGTCGTTAACATCTCACA
ATGGCACAGCCTCTACATTCACAAGAGGACTCCTGGTTGATTTCCATCTG
GAAGCATCTACACCTGACACTTTCCGGGCCCCACCCTTACCTTTGCCATA
CGATGTTGTTTTTGGTTGCCCACCCTCAACAGACTCAGAATCCGTTGGAG
AAACTGTCAGTGGTGGTAGTTTTGAAACATTAGCTATGTGTGAAGTTGTT
GAGGATGCAGACTGCAAAACTCAAGCTAGTTCTTTGATTGCTTCACCAAG
GAAGTCTGAAGTTTCGCAATTGAATGTATTTGCAGCATCCGAAGAGGAGG
ACACTTGTCCCATTTGCCTTGAAGAGTATGATACAGAGAATCCAAAACTT
ATCACAAAATGTGAACATCATTTCCACCTATCTTGCATTTTTGGAGTGGA
ATGAAAGAAGTGAATCCTGCCCCATATGTGATCAGGATGCAGTGTTTCGA
TATGTTATTGTTGCCACGGATCACTCCAAAGTGCAAGGG
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