CF417248

Overview
NameCF417248
Unique NameCF417248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12221 contig Csv1_Contig12221:46..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.687e-63
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 1.687e-63
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.687e-63
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.411e-63
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.094e-62
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.094e-62
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.865e-62
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET++YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 2.436e-62
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.182e-62
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
[Close]
BLAST of CF417248 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.182e-62
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 
Query:   58 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 411
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
The following BLAST results are available for this feature:
BLAST of CF417248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_WHEAT1.687e-6399.15Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ORYSJ1.687e-6399.15Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.687e-6399.15Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES6.411e-6398.31Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC1.094e-6298.31Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH1.094e-6298.31Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_VICFA1.865e-6297.46Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOYBN2.436e-6297.46Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_SOLLC3.182e-6297.46Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA3.182e-6297.46Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-178 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417248 ID=CF417248; Name=CF417248; organism=Citrus sinensis; type=EST; length=419bp
GCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAGGTTTTATACTAGAT
TTGCATAATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCC
ATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTT
GGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGA
GATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGG
CTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAG
ACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTT
TATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTCA
TCATTGACTCCCCCCCCGG
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