CF417278

Overview
NameCF417278
Unique NameCF417278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig131 contig Csv1_Contig131:1012..1708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.669e-22
Identity = 52/176 (29.55%), Postives = 91/176 (51.70%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH   YY+     IE +P K ++     + + EL+++P   L +  G +L+ +   +      L ++NI +N+ +
Sbjct:   96 FNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNHRLKIESSPAKLVL---PNLNLYELVDFPSGFLFYTQGPNLDLVVKAICSLTDVLVDHNIAHNLFL 253          

HSP 2 Score: 30.0314 bits (66), Expect = 1.669e-22
Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  616 DTQVNPAVWEISGHMVLKRKKDYEEASE 699
            ++  N A+ E++GH+  K ++DYE A+E
Sbjct:  288 ESAFNVALCELAGHLPFKNRQDYESATE 315          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 65/179 (36.31%), Postives = 93/179 (51.96%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH   YY+A P P+E AP+  +   G    I  L   P  G +F     G  LE L + V  A   L +  I +N+ +
Sbjct:  124 FNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYLAHPLPVEGAPSTPLDPKGC---IHLLQALPAPGFLFYTSGPGPDLEVLISRVCRATDYLSDREIAHNLFV 292          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 61/179 (34.08%), Postives = 92/179 (51.40%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L + P  G +F     G  LE L + V  A   L ++ I +N+ +
Sbjct:  124 FNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQDLPAPGFLFYTRGPGTDLESLISRVCRATDYLTDHEIAHNLFV 291          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 60/179 (33.52%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E AP++ +   G   ++  L   P  G +F     G  LE L + V  A   L +  I +N+ +
Sbjct:  124 FNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEGAPSEPLDPRG---RLHVLQALPAPGFLFYTSRPGPDLEALISRVCRATDYLTDCEIAHNLFV 291          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 60/179 (33.52%), Postives = 90/179 (50.28%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF---EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L   P  G +F     G  LE L   V  A   L ++ I +N+ +
Sbjct:  124 FNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQGLPAPGFLFYTRGPGLDLESLICRVCRATDYLTDHEIAHNLFV 291          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF-EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P  G +F   G  L+  +  +      L   NI +N+ +
Sbjct:  111 FNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLHLHGFYLDHELLIESSCSKPLCPE---INFHLVTHFPAPGFLFYTDGKDLKSTAQKICKVTDFLVAKNIAHNLFV 307          
BLAST of CF417278 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 57/200 (28.50%), Postives = 94/200 (47.00%), Query Frame = 2
Query:    2 FNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF-EGGNSLEDLSNTVSDACICLQENNIPYNVLI 529
            FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P    +F   G +L+  +  +      L   NI +N+ I
Sbjct:  112 FNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPLCPE---MNFHLITHFPAPSFLFYTDGRNLKSTAQNICKVTDFLVAKNIAHNLFI 308          
The following BLAST results are available for this feature:
BLAST of CF417278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_DANRE1.669e-2229.55UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
CO058_MOUSE4.008e-2136.31UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_HUMAN1.523e-2034.08UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_BOVIN9.871e-2033.52UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_MACFA2.872e-1933.52UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_XENTR4.147e-1828.50UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_XENLA2.688e-1728.50UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-208 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417278 ID=CF417278; Name=CF417278; organism=Citrus sinensis; type=EST; length=699bp
GTTCAACTTTACCAAAGTGGGGCAAGAAGAGGTGCTCTTCCAGTTTGAGG
CAAGCGAAGATGGTGAAGTCCAGTTTCACCCAAGTGCCCCCATTGATGTT
GAGAATTCTCCAAGTGTTGTTGCCATCAATGTGAGTCCTATTGAGTACGG
GCATGTGCTGTTGATCCCACGAGTTCTTGAGTGCTTGCCACAGAGGATTG
ACCGTGATAGCTTCTTGCTCGCACTTTACATGGCTGCAGAAGCTGGGAAT
CCATACTTCAGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAA
CCACCTTCACTTCCAGGCTTACTACATGGCCTTGCCTTTTCCAATTGAGA
AGGCTCCTACCAAGAAGATAATCTCTACTGGCAGTGGTGTGAAGATCTCT
GAGCTTTTAAACTATCCAGTCAGAGGCCTCGTCTTTGAAGGTGGAAACTC
TCTGGAAGACTTATCCAACACAGTCTCGGATGCGTGCATTTGCCTTCAAG
AGAACAACATTCCTTACAATGTTCTCATTGCTGATTGTGGAAAGCGCATA
TTTCTCTTACCACAGTGCTATGCTGAGAAACAAGCTNTTTGGGGAAGTGA
GTTCAGAGCTTCTGGGACACCCAAGTGAACCCTGCTGTGTGGGAGATTAG
TGGGCATATGGTGTTAAAGAGGAAGAAGGACTATGAAGAGGCATCCGAG
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