CF417289

Overview
NameCF417289
Unique NameCF417289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.710e-80
Identity = 142/158 (89.87%), Postives = 154/158 (97.47%), Query Frame = 1
Query:    1 VARCEVQSVVDVNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDY 474
            VARCE+QSV D+NNQRSFLTLNALNEFD KYSGVDWRQKLETQRGAVLATELKNN NKLAKWTAQ+LLA+AD+MK+G+VSRVHPRDHFNHVIL+V+GYKPKDFA QINL+T+NMWGIVKSIVDLCMKL+EGKYVLVKDPSKPQVRIYEVPPDAFENDY
Sbjct:  393 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLAKWTAQALLANADMMKIGFVSRVHPRDHFNHVILSVLGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLSEGKYVLVKDPSKPQVRIYEVPPDAFENDY 550          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROER (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila erecta GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEAQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROSI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila simulans GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROSE (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila sechellia GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROME (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila melanogaster GN=eIF-3p66 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROYA (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila yakuba GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 92/159 (57.86%), Postives = 124/159 (77.99%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   +    F+T+ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGDSQFMTIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROVI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila virilis GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROMO (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila mojavensis GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROGR (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila grimshawi GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 92/159 (57.86%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  FL++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  379 VARCEHDGVLQTPSGEPQFLSIKALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSD 537          
BLAST of CF417289 vs. ExPASy Swiss-Prot
Match: EI3D1_DROWI (Eukaryotic translation initiation factor 3 subunit D-1 OS=Drosophila willistoni GN=eIF-3p66 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 91/159 (57.23%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 VARCEVQSVVDV-NNQRSFLTLNALNEFDSKYS-GVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKPKDFATQINLSTANMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFEND 471
            VARCE   V+   + +  F+++ ALNE+DSK + GV+WRQKL+TQRGAVLA EL+NNA KLAKWT Q++LA +D +KLGYVSR++PRDH  HVIL    +KP +FATQINLS  N WGI++ I+DL MK  +GKY+++KDP+KP +R+Y++P + F++D
Sbjct:  377 VARCEHDGVLQTPSGEPQFMSIKALNEWDSKMANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAGSDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRCIIDLVMKQRDGKYLIMKDPNKPIIRLYDIPDNTFDSD 535          
The following BLAST results are available for this feature:
BLAST of CF417289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EIF3D_ARATH1.710e-8089.87Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROER1.196e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROSI1.561e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROSE1.561e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROME1.561e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROYA2.039e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROVI2.663e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROMO2.663e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROGR2.663e-4957.86Eukaryotic translation initiation factor 3 subunit... [more]
EI3D1_DROWI4.543e-4957.23Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-219 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417289 ID=CF417289; Name=CF417289; organism=Citrus sinensis; type=EST; length=698bp
GTTGCGAGGTGTGAGGTGCAGAGTGTTGTGGATGTTAATAATCAGAGGTC
GTTTTTGACGTTAAATGCTCTTAATGAGTTCGATTCCAAGTACTCTGGTG
TTGATTGGAGGCAGAAGTTGGAGACTCAAAGGGGTGCGGTTTTAGCCACT
GAGTTGAAGAACAATGCTAATAAGTTGGCAAAATGGACTGCACAATCGTT
GTTGGCGAGTGCTGATTTGATGAAATTGGGATATGTTTCAAGGGTTCATC
CACGTGATCATTTTAACCATGTGATATTGGCTGTGATGGGGTATAAGCCA
AAGGATTTTGCCACCCAGATTAACTTGAGTACTGCAAATATGTGGGGAAT
TGTGAAGAGTATTGTGGATTTGTGCATGAAGTTGAATGAGGGGAAGTATG
TGCTTGTGAAGGATCCATCTAAGCCGCAAGTGAGGATCTATGAGGTTCCT
CCAGATGCATTTGAGAATGATTATGTGGAGGAGCCTTTGCCAGAGGAGGA
GCAGGTTCAGCCACCTACTGAGAATGCTGAAGGAGTGGAGGCAAATGGAG
CTGCAAATGATTTGGATGATGTTGTTGTTGATGCTCAAGCTTGATGGTCG
AAGTCTTTTTTTTTTCTGAAAACAGATACCTGCCAGTGAGTGGTTTGCAT
CATGACAGTAGCAGACTAACATGCTGAAAGGATCCTGGCCCTTTTTGA
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