CF417300
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.150e-49 Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 2 Query: 248 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553 + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL ++ Sbjct: 77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKA 178 HSP 2 Score: 87.8113 bits (216), Expect = 1.150e-49 Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 3 Query: 534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698 P G AVIPPGK +SALGL GGP+FGFTK+NELFVG+LAQLGIAFS+IGEII Sbjct: 172 PTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEII 226 HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 2.121e-48 Identity = 77/163 (47.24%), Postives = 87/163 (53.37%), Query Frame = 2 Query: 65 RDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553 ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGAL DRGKF+D+P PTGL ++ Sbjct: 18 KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKA 176 HSP 2 Score: 87.0409 bits (214), Expect = 2.121e-48 Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 3 Query: 534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698 P G AVIPPGKG +SALGL GGP+F FTK+NELFVG+LAQLGIAFS+IGEII Sbjct: 170 PTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEII 224 HSP 3 Score: 70.4774 bits (171), Expect = 9.894e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKFV + +E Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.766e-47 Identity = 66/102 (64.71%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 248 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553 + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRG+F+D+P TGL ++ Sbjct: 77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKA 178 HSP 2 Score: 85.5001 bits (210), Expect = 1.766e-47 Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 3 Query: 540 GSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698 G AVIPPGK +SALGL GGP+FGFTK+NELFVG+LAQLGIAFS+IGEII Sbjct: 174 GLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEII 226 HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32 Identity = 90/219 (41.10%), Postives = 119/219 (54.34%), Query Frame = 2 Query: 17 LLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRSCHSSRQRLEISIGSQGRRSHIWIHEVKRAVCGKIGSVGY 670 LL+M GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGALGDRG+FVDEP TGL ++ + + ++G + + + G++ +G+ Sbjct: 6 LLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGF 214 HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16 Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3 Query: 540 GSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698 G AVIPPGK +RSALGLK GP+FGFTKSNELFVG+LAQLG AFSLIGEII Sbjct: 171 GLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEII 223 HSP 3 Score: 74.3294 bits (181), Expect = 6.852e-13 Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2 Query: 308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP AI GKF+ + +E Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28 Identity = 70/138 (50.72%), Postives = 84/138 (60.87%), Query Frame = 2 Query: 254 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRSCHSSRQRLEISIGSQGRRSHIWIHEVKRAVCGKIGSVG 667 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL ++ + + ++G + + + G++ +G Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLG 204 HSP 2 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 3 Query: 534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698 P G AVIPPGK +RSALGLK GP+FGFTK+NELFVG+LAQLGIAFSLIGEII Sbjct: 160 PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEII 214 HSP 3 Score: 70.4774 bits (171), Expect = 9.894e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP AI GKF+ + E Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263 The following BLAST results are available for this feature:
BLAST of CF417300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417300 ID=CF417300; Name=CF417300; organism=Citrus sinensis; type=EST; length=699bpback to top |