CF417300

Overview
NameCF417300
Unique NameCF417300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12634 contig Csv1_Contig12634:82..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.150e-49
Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  248 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL ++
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKA 178          

HSP 2 Score: 87.8113 bits (216), Expect = 1.150e-49
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698
            P G   AVIPPGK  +SALGL  GGP+FGFTK+NELFVG+LAQLGIAFS+IGEII
Sbjct:  172 PTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEII 226          

HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.121e-48
Identity = 77/163 (47.24%), Postives = 87/163 (53.37%), Query Frame = 2
Query:   65 RDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553
            ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL ++
Sbjct:   18 KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKA 176          

HSP 2 Score: 87.0409 bits (214), Expect = 2.121e-48
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698
            P G   AVIPPGKG +SALGL  GGP+F FTK+NELFVG+LAQLGIAFS+IGEII
Sbjct:  170 PTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEII 224          

HSP 3 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.766e-47
Identity = 66/102 (64.71%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  248 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRS 553
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL ++
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKA 178          

HSP 2 Score: 85.5001 bits (210), Expect = 1.766e-47
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  540 GSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698
            G   AVIPPGK  +SALGL  GGP+FGFTK+NELFVG+LAQLGIAFS+IGEII
Sbjct:  174 GLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEII 226          

HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 90/219 (41.10%), Postives = 119/219 (54.34%), Query Frame = 2
Query:   17 LLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRSCHSSRQRLEISIGSQGRRSHIWIHEVKRAVCGKIGSVGY 670
            LL+M GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL ++     + +  ++G + +       +      G++  +G+
Sbjct:    6 LLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGF 214          

HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  540 GSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698
            G   AVIPPGK +RSALGLK  GP+FGFTKSNELFVG+LAQLG AFSLIGEII
Sbjct:  171 GLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEII 223          

HSP 3 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of CF417300 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 70/138 (50.72%), Postives = 84/138 (60.87%), Query Frame = 2
Query:  254 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRSCHSSRQRLEISIGSQGRRSHIWIHEVKRAVCGKIGSVG 667
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL ++     + +  ++G + +       +      G++  +G
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLG 204          

HSP 2 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 3
Query:  534 PLGSXGAVIPPGKGLRSALGLKXGGPIFGFTKSNELFVGKLAQLGIAFSLIGEII 698
            P G   AVIPPGK +RSALGLK  GP+FGFTK+NELFVG+LAQLGIAFSLIGEII
Sbjct:  160 PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEII 214          

HSP 3 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  308 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 532
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of CF417300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SOLLC1.150e-4967.65Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC2.121e-4847.24Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG1.766e-4764.71Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SPIOL1.328e-3241.10Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_ARATH7.541e-2850.72Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-230 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417300 ID=CF417300; Name=CF417300; organism=Citrus sinensis; type=EST; length=699bp
ATAATATGTTGTCACTCTGCTGCTCATGTCTGGGGTTTCCACTAGCCACG
CAGGAAACTTGAAAAGAGACTCTTTAGTCACATTTCAAACGCAGATGCTG
AGACCTAAGCCATTCTCTCATCTTATGTTCAACCCACTCTCTAATGAATC
TTTAACTGCTGCTGCGGCTTCTTCATCATCTAAAGCTTTTTCTACTGTTG
CCCTCTTCAAATCTAAAACCAAAGCTCCACCCAAGACCAAGAAGGTTGAA
TCAAAGCCAAAAGTTGAGGATGGTATCTTTGGGACCTCTGGAGGATTTGG
TTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGTGTTGCCATGATTGGCT
TTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGGGAAGGGGATTCTAGCT
CAGTTGAATTTGGAGACCGGAATTCCAATCTATGAAGCAGAGCCACTGCT
TTTATTTTTCATCCTGTTCACCTTGCTTGGAGCAATTGGAGCTTTGGGTG
ACCGTGGTAAGTTCGTTGATGAGCCAGATGAGCCCACTGGGCTCGGNAGG
AGCTGTCATTCCTCCAGGCAAAGGCTTGAGATCAGCATTGGGTCTCAAGG
NAGGAGGTCCCATATTTGGATTCACGAAGTCAAACGAGCTGTTTGTGGGA
AAATTGGCTCAGTTGGGTATTGCATTCTCTTTGATTGGAGAAATCATAA
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