CF417309

Overview
NameCF417309
Unique NameCF417309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4438 contig Csv1_Contig4438:149..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417309 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 3 
Query:    3 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 281
            +VWD+R L KS   L   + A+ ++ F+  G  +A+ E ADFV ++D K  F   Q IDFFGEI+G  +S   ++LFIGV D   G +L++ R
Sbjct:  325 KVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTKL-FNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRR 416
The following BLAST results are available for this feature:
BLAST of CF417309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YGI3_SCHPO1.491e-1341.94Uncharacterized WD repeat-containing protein C2A9.... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-239 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417309 ID=CF417309; Name=CF417309; organism=Citrus sinensis; type=EST; length=632bp
GTCGAGTATGGGATGTTAGGAACTTATCAAAGTCAGTTGCTGTGCTCAAG
GGCAATTTGGGAGCAATTCGATCAATTCGTTTCACGTCTGATGGGAATTT
CATGGCAATGGCAGAGCCAGCAGATTTTGTGCATGTCTATGATGCGAAGA
ATGGGTTTGAGAAAGAGCAGGAGATCGATTTTTTTGGGGAGATCTCCGGT
ATGACTTTTAGCCCTGACACAGAAGCCCTCTTCATTGGAGTGTGGGATCG
CACCTATGGAAGTCTCCTTCAATACAACCGATGCAGGAATTATACATATC
TTGACACCCTTTTGTGAAATGATTGCTGCATACGTCCATGTCAGCTTTTA
TCTACAATTTTTATATGTTAACAGGGAATGTTAGAGGATGATGTGTCTGA
CAATTGGTGTACATGAACTTTGGTTATGTACATCGTGGTACTTTGTTGTA
ATATTTAGTCATTGACTTGGTTTTCAAATGATTCTGGCTGGCGGTTGGAC
TGTGAGAATAAAGATTGGGATTGTAGGGACGGGGTGGCGAGGATTTGANA
ATTTTAAGACTTTCNAAGGTTTGTACAATAATGGAGAAGATTTGTAAAGA
GGCTTTGAAGTGTATTTGGTTGGGAGACTGGG
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