CF417320

Overview
NameCF417320
Unique NameCF417320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417320_ssr156 microsatellite CF417320_ssr156:156..170. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417320_ssr1 microsatellite CF417320_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.962e-61
Identity = 106/179 (59.22%), Postives = 126/179 (70.39%), Query Frame = 3
Query:   66 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFP---SRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            AH +L ++P +++ +L+  + NP                   +FHGVSLK       L LS AA A+ KPLT           LKGTS+VEGVVTLTQE+ GPTTVNV++TGLTPGPHGFHLHE+GDTTNGC+STG HFNPN  THGAP+DE RHAGDLGNI+ANA+GVAEATIVDNQI
Sbjct:    3 AHCILFSSPAATT-SLIFPISNPNTAVSLPSS----------SFHGVSLKSTINRQSLTLSAAASAAPKPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQI 170          

HSP 2 Score: 55.0694 bits (131), Expect = 5.962e-61
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN VVGRAFV HEL DDLGKGGHELSL
Sbjct:  174 GPNAVVGRAFVVHELADDLGKGGHELSL 201          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 6.493e-60
Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 3
Query:   66 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKF-PSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            AH +L +AP  ++ +L++   +                    +F+G+S K  P+  +LSL+  A+ KPLT           LKGTSNVEGVVTLTQED GPTTVNVR++GL PG HGFHLHE+GDTTNGCMSTG HFNP+  THGAP+DEVRHAGDLGNIVAN +GVAEATIVDNQI
Sbjct:    3 AHTILASAPSHTTFSLISPFSSTPTNALSSSLQSS-------SFNGLSFKLSPTTQSLSLSTSAASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQI 172          

HSP 2 Score: 53.9138 bits (128), Expect = 6.493e-60
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELS 684
            GPN+VVGRA V HELEDDLGKGGHELS
Sbjct:  176 GPNSVVGRALVVHELEDDLGKGGHELS 202          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.877e-59
Identity = 96/136 (70.59%), Postives = 108/136 (79.41%), Query Frame = 3
Query:  192 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +FHGVSLK  S+   +L+L++V S KP             LKGTSNVEGVVTLTQ+D GPTTV VR+TGL PG HGFHLHE+GDTTNGCMSTG HFNPN +THGAP DEVRHAGDLGNI ANA+GVAEAT+VDNQI
Sbjct:   34 SFHGVSLKVKSKTPQSLTLSSVTSPKPFIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQI 169          

HSP 2 Score: 55.4546 bits (132), Expect = 1.877e-59
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+VVGRA V HELEDDLGKGGHELSL
Sbjct:  173 GPNSVVGRALVVHELEDDLGKGGHELSL 200          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.879e-59
Identity = 106/177 (59.89%), Postives = 119/177 (67.23%), Query Frame = 3
Query:   63 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            MA   LV+  P SSH+LL T                       +F GVS+K   +   S  A ++ KPLT           LKGTS VEGVVTLTQ+D GPTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNIVANA GVAEATIVDNQI
Sbjct:    1 MASQTLVSPSPLSSHSLLRT-----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQI 152          

HSP 2 Score: 54.299 bits (129), Expect = 1.879e-59
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+VVGRA V HEL+DDLGKGGHELSL
Sbjct:  156 GPNSVVGRALVVHELQDDLGKGGHELSL 183          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.072e-59
Identity = 95/136 (69.85%), Postives = 108/136 (79.41%), Query Frame = 3
Query:  192 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +F GVSL   ++   +L+L AV + KPLT           LKG SNVEGVVTL+Q+D GPTTVNVR+TGL PG HGFHLHEYGDTTNGCMSTGAHFNPN +THGAP DE+RHAGDLGNIVANA+GVAE T+VDNQI
Sbjct:   32 SFLGVSLNVNAKFGQSLTLYAVTTPKPLTVFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQI 167          

HSP 2 Score: 55.4546 bits (132), Expect = 7.072e-59
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+VVGRA V HELEDDLGKGGHELSL
Sbjct:  171 GPNSVVGRALVVHELEDDLGKGGHELSL 198          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 2.665e-58
Identity = 97/137 (70.80%), Postives = 108/137 (78.83%), Query Frame = 3
Query:  192 AFHGVSLKFPS--RL-NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +F GVSL   +  RL ++S A  A  K LT           LKGTS+VEGVVTLTQ+D GPTTVNVR+TGLTPGPHGFHLHE+GDTTNGC+STG HFNPNNMTHGAP+DE RHAGDLGNI ANA+GVAE TIVDNQI
Sbjct:   30 SFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQI 166          

HSP 2 Score: 56.225 bits (134), Expect = 2.665e-58
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+VVGRAFV HEL+DDLGKGGHELSL
Sbjct:  170 GPNSVVGRAFVVHELKDDLGKGGHELSL 197          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.475e-58
Identity = 93/133 (69.92%), Postives = 106/133 (79.70%), Query Frame = 3
Query:  195 FHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            FHG+SLK   +   S+    + KPL+           LKGTS+VEGVVTL+QED GPTTV+VR+TGLTPG HGFHLHE+GDTTNGCMSTGAHFNPN MTHGAP+D+VRHAGDLGNI+ANA GVAEATIVD QI
Sbjct:   33 FHGLSLKLTRQ---SIPLATAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQI 162          

HSP 2 Score: 54.6842 bits (130), Expect = 3.475e-58
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN V+GRA V HELEDDLGKGGHELSL
Sbjct:  166 GPNAVIGRALVVHELEDDLGKGGHELSL 193          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.425e-56
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 3
Query:  225 RLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            RL    A  A+ + L            LKGTS VEGVVTLTQ+D GPTTVNVRVTGLTPG HGFHLHE+GDTTNGC+STG HFNPNN+THGAP+DEVRHAGDLGNIVANA GVAEATIVD QI
Sbjct:   39 RLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQI 161          

HSP 2 Score: 57.7658 bits (138), Expect = 1.425e-56
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+VVGRAFV HELEDDLGKGGHELSL
Sbjct:  165 GPNSVVGRAFVVHELEDDLGKGGHELSL 192          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.636e-55
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 3
Query:  192 AFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            +F GVS+K   +   S  + +  +PL+           LKG S VEGVVTLTQE+  PTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNI+A+ANGVAEATIVDNQI
Sbjct:   21 SFSGVSVKLSPQF--STLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQI 152          

HSP 2 Score: 55.0694 bits (131), Expect = 2.636e-55
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            GPN+V+GRA V HELEDDLGKGGHELSL
Sbjct:  156 GPNSVIGRALVVHELEDDLGKGGHELSL 183          
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.197e-54
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 3
Query:  237 SLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593
            S+AA AS + +            LKGTS V+GVVTL QED GPTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG+HFNPN +THGAP D VRHAGDLGNIVAN +G+AEATIVD+QI
Sbjct:   48 SIAAAASPRSMVVVAATKKAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQI 166          

HSP 2 Score: 54.6842 bits (130), Expect = 2.197e-54
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1
Query:  604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687
            G N+VVGRAFV HELEDDLGKGGHELSL
Sbjct:  170 GSNSVVGRAFVVHELEDDLGKGGHELSL 197          
The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
SODCP_SOLCS5.962e-6159.22Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL6.493e-6057.63Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_PETHY1.877e-5970.59Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_PEA1.879e-5959.89Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLLC7.072e-5969.85Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ARATH2.665e-5870.80Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_VITVI3.475e-5869.92Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_ORYSJ1.425e-5673.17Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_MEDSA2.636e-5566.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ZANAE2.197e-5471.43Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-250 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bp
GTCCGTCCGTCCATCCGTCCATCCACTCACCCTCACGCTCAATGCAAGCC
GCAATAGCAGCCATGGCTCACGTTCTCCTCGTAGCAGCACCGCCCTCTTC
ATCTCACACACTCCTTGCCACATTGCCAAATCCTAGCAGTATCACGCGCT
CTTCCTCTTCTTCTTCTTCTCATTCTCCCTCGCTTCACTCTGCATTCCAC
GGCGTCTCCCTCAAATTCCCCTCTCGTCTCAACTTATCTCTCGCCGCCGT
GGCCTCCAAGAAGCCGTTGACTGTCGTTGCTGCCGCCAAGAAAGCGGTGG
CTGTTCTTAAAGGCACTTCCAATGTTGAAGGAGTTGTTACGTTGACCCAA
GAAGATGGCGGTCCTACGACTGTCAATGTTCGTGTTACTGGTCTTACTCC
TGGGCCTCACGGGTTCCACCTACACGAATATGGTGATACGACAAATGGGT
GTATGTCAACAGGAGCACATTTCAATCCTAATAACATGACACACGGTGCT
CCTAAAGATGAAGTGCGACACGCGGGTGACCTGGGAAACATAGTTGCTAA
CGCCAATGGTGTGGCAGAAGCAACAATTGTGGACAACCAGATATCACTGG
NATGGTCCAAACACAGTAGTTGGAAGAGCCTTTGTGGNTCATGAGCTTGA
GGATGACCTTGGAAAAGGTGGGCATGAACTTAGTCTAAC
back to top