CF417320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 5.962e-61 Identity = 106/179 (59.22%), Postives = 126/179 (70.39%), Query Frame = 3 Query: 66 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFP---SRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 AH +L ++P +++ +L+ + NP +FHGVSLK L LS AA A+ KPLT LKGTS+VEGVVTLTQE+ GPTTVNV++TGLTPGPHGFHLHE+GDTTNGC+STG HFNPN THGAP+DE RHAGDLGNI+ANA+GVAEATIVDNQI Sbjct: 3 AHCILFSSPAATT-SLIFPISNPNTAVSLPSS----------SFHGVSLKSTINRQSLTLSAAASAAPKPLTVFAATKKAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQI 170 HSP 2 Score: 55.0694 bits (131), Expect = 5.962e-61 Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN VVGRAFV HEL DDLGKGGHELSL Sbjct: 174 GPNAVVGRAFVVHELADDLGKGGHELSL 201
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 6.493e-60 Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 3 Query: 66 AHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKF-PSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 AH +L +AP ++ +L++ + +F+G+S K P+ +LSL+ A+ KPLT LKGTSNVEGVVTLTQED GPTTVNVR++GL PG HGFHLHE+GDTTNGCMSTG HFNP+ THGAP+DEVRHAGDLGNIVAN +GVAEATIVDNQI Sbjct: 3 AHTILASAPSHTTFSLISPFSSTPTNALSSSLQSS-------SFNGLSFKLSPTTQSLSLSTSAASKPLTIVAATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQI 172 HSP 2 Score: 53.9138 bits (128), Expect = 6.493e-60 Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELS 684 GPN+VVGRA V HELEDDLGKGGHELS Sbjct: 176 GPNSVVGRALVVHELEDDLGKGGHELS 202
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.877e-59 Identity = 96/136 (70.59%), Postives = 108/136 (79.41%), Query Frame = 3 Query: 192 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 +FHGVSLK S+ +L+L++V S KP LKGTSNVEGVVTLTQ+D GPTTV VR+TGL PG HGFHLHE+GDTTNGCMSTG HFNPN +THGAP DEVRHAGDLGNI ANA+GVAEAT+VDNQI Sbjct: 34 SFHGVSLKVKSKTPQSLTLSSVTSPKPFIVFAATKKAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQI 169 HSP 2 Score: 55.4546 bits (132), Expect = 1.877e-59 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+VVGRA V HELEDDLGKGGHELSL Sbjct: 173 GPNSVVGRALVVHELEDDLGKGGHELSL 200
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.879e-59 Identity = 106/177 (59.89%), Postives = 119/177 (67.23%), Query Frame = 3 Query: 63 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 MA LV+ P SSH+LL T +F GVS+K + S A ++ KPLT LKGTS VEGVVTLTQ+D GPTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNIVANA GVAEATIVDNQI Sbjct: 1 MASQTLVSPSPLSSHSLLRT-----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQI 152 HSP 2 Score: 54.299 bits (129), Expect = 1.879e-59 Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+VVGRA V HEL+DDLGKGGHELSL Sbjct: 156 GPNSVVGRALVVHELQDDLGKGGHELSL 183
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 7.072e-59 Identity = 95/136 (69.85%), Postives = 108/136 (79.41%), Query Frame = 3 Query: 192 AFHGVSLKFPSRL--NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 +F GVSL ++ +L+L AV + KPLT LKG SNVEGVVTL+Q+D GPTTVNVR+TGL PG HGFHLHEYGDTTNGCMSTGAHFNPN +THGAP DE+RHAGDLGNIVANA+GVAE T+VDNQI Sbjct: 32 SFLGVSLNVNAKFGQSLTLYAVTTPKPLTVFAATKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQI 167 HSP 2 Score: 55.4546 bits (132), Expect = 7.072e-59 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+VVGRA V HELEDDLGKGGHELSL Sbjct: 171 GPNSVVGRALVVHELEDDLGKGGHELSL 198
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 2.665e-58 Identity = 97/137 (70.80%), Postives = 108/137 (78.83%), Query Frame = 3 Query: 192 AFHGVSLKFPS--RL-NLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 +F GVSL + RL ++S A A K LT LKGTS+VEGVVTLTQ+D GPTTVNVR+TGLTPGPHGFHLHE+GDTTNGC+STG HFNPNNMTHGAP+DE RHAGDLGNI ANA+GVAE TIVDNQI Sbjct: 30 SFRGVSLNNNNLHRLQSVSFAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQI 166 HSP 2 Score: 56.225 bits (134), Expect = 2.665e-58 Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+VVGRAFV HEL+DDLGKGGHELSL Sbjct: 170 GPNSVVGRAFVVHELKDDLGKGGHELSL 197
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.475e-58 Identity = 93/133 (69.92%), Postives = 106/133 (79.70%), Query Frame = 3 Query: 195 FHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 FHG+SLK + S+ + KPL+ LKGTS+VEGVVTL+QED GPTTV+VR+TGLTPG HGFHLHE+GDTTNGCMSTGAHFNPN MTHGAP+D+VRHAGDLGNI+ANA GVAEATIVD QI Sbjct: 33 FHGLSLKLTRQ---SIPLATAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQI 162 HSP 2 Score: 54.6842 bits (130), Expect = 3.475e-58 Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN V+GRA V HELEDDLGKGGHELSL Sbjct: 166 GPNAVIGRALVVHELEDDLGKGGHELSL 193
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.425e-56 Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 3 Query: 225 RLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 RL A A+ + L LKGTS VEGVVTLTQ+D GPTTVNVRVTGLTPG HGFHLHE+GDTTNGC+STG HFNPNN+THGAP+DEVRHAGDLGNIVANA GVAEATIVD QI Sbjct: 39 RLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQI 161 HSP 2 Score: 57.7658 bits (138), Expect = 1.425e-56 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+VVGRAFV HELEDDLGKGGHELSL Sbjct: 165 GPNSVVGRAFVVHELEDDLGKGGHELSL 192
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.636e-55 Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 3 Query: 192 AFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 +F GVS+K + S + + +PL+ LKG S VEGVVTLTQE+ PTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG HFNPN +THGAP+DE+RHAGDLGNI+A+ANGVAEATIVDNQI Sbjct: 21 SFSGVSVKLSPQF--STLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQI 152 HSP 2 Score: 55.0694 bits (131), Expect = 2.636e-55 Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 GPN+V+GRA V HELEDDLGKGGHELSL Sbjct: 156 GPNSVIGRALVVHELEDDLGKGGHELSL 183
BLAST of CF417320 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.197e-54 Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 3 Query: 237 SLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQI 593 S+AA AS + + LKGTS V+GVVTL QED GPTTVNVR+TGLTPG HGFHLHEYGDTTNGC+STG+HFNPN +THGAP D VRHAGDLGNIVAN +G+AEATIVD+QI Sbjct: 48 SIAAAASPRSMVVVAATKKAVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQI 166 HSP 2 Score: 54.6842 bits (130), Expect = 2.197e-54 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 604 GPNTVVGRAFVXHELEDDLGKGGHELSL 687 G N+VVGRAFV HELEDDLGKGGHELSL Sbjct: 170 GSNSVVGRAFVVHELEDDLGKGGHELSL 197 The following BLAST results are available for this feature:
BLAST of CF417320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417320 ID=CF417320; Name=CF417320; organism=Citrus sinensis; type=EST; length=689bpback to top |