CF417325

Overview
NameCF417325
Unique NameCF417325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:990..1509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.975e-39
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            FEV+ GFR YKSGVY+S  CG TPMDVNHAV+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  279 FEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASYPIVA 360          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.973e-38
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            FEV+  FR YKSGVY+ + CG+TPMDVNHAV+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCGIATCASYPVVA
Sbjct:  277 FEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGIATCASYPVVA 358          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.365e-38
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            F+V++GFR YKSGVY+S  CG +PMDVNHAV+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMCGIATCASYP+VA
Sbjct:  281 FQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCASYPIVA 362          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.740e-38
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            FEVV GF+ YKSGVY+ST+CG+TPMDVNHAV+AVGYGVE+G PYWLIKNSWG +WG+ GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  275 FEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASYPIVA 356          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.792e-38
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            FEVV  FRFYK GV++S  CGNTPMDVNHAV+AVGYGVED VPYWLIKNSWG  WGD+GYFKMEMGKNMCG+ATC+SYPVVA
Sbjct:  277 FEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGVATCSSYPVVA 358          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.181e-37
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 247
            F+V+DGFR YKSGVY+S  CG TP DVNHAV+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMC IATCASYPVVA
Sbjct:  280 FQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASYPVVA 361          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.085e-28
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 241
            FEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG NWG++GYF +E GKNMCG+A CASYP+
Sbjct:  251 FEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASYPI 330          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.417e-28
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 241
            FEV + F  Y+ G+YSST C  TP  VNHAV+AVGYG E+G+PYW++KNSWG  WG +GYF +E GKNMCG+A CASYP+
Sbjct:  253 FEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 124.405 bits (311), Expect = 3.157e-28
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 241
            FEV   F  Y++G+YSST C  TP  VNHAV+AVGYG ++G+PYW++KNSWG  WG +GYF +E GKNMCG+A CASYP+
Sbjct:  253 FEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CF417325 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.123e-28
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    2 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 241
            FEV   F  Y+ G+YSST C  TP  VNHAV+AVGYG E G+PYW++KNSWG NWG  GYF +E GKNMCG+A CAS+P+
Sbjct:  253 FEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACASFPI 332          
The following BLAST results are available for this feature:
BLAST of CF417325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
CYSP2_MAIZE3.975e-3984.15Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEU_ARATH1.973e-3884.15Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ORYC_ORYSJ3.365e-3881.71Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_SOLLC5.740e-3881.71Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ALEUL_ARATH9.792e-3882.93Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ALEU_HORVU2.181e-3782.93Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_RAT1.085e-2865.00Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_PIG1.417e-2863.75Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_HUMAN3.157e-2862.50Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CATH_BOVIN4.123e-2863.75Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-255 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417325 ID=CF417325; Name=CF417325; organism=Citrus sinensis; type=EST; length=520bp
ATTTGAAGTAGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCA
GCACTAAATGTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCT
GTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTC
TTGGGGAGAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGA
AGAACATGTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAG
TCTGCTCCTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTC
ATAAAACTTATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTT
ATGTACGAAATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAA
TGCATGGCTGCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTA
AACAGTCATTGTGACTAGGACACCAACGATGTTATATATATTTTGTCAAT
GCAAGGTAGTTGTTATATGG
back to top