CF417338 | Citrus Genome Database

Overview


Name	CF417338
Unique Name	CF417338
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6312	contig	Csv1_Contig6312:414..1021.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.412e-87
Identity = 123/144 (85.42%), Postives = 128/144 (88.89%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLSGE 432
            GN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL G+
Sbjct:   74 GNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGK 217

HSP 2 Score: 105.145 bits (261), Expect = 2.412e-87
Identity = 49/61 (80.33%), Postives = 58/61 (95.08%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            + KFA+GVSMVT+L+LAISYPTLAAAPHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DP
Sbjct:  215 IGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDP 275

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 2.412e-87
Identity = 120/141 (85.11%), Postives = 126/141 (89.36%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED L
Sbjct:   73 GNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213

HSP 2 Score: 109.768 bits (273), Expect = 2.412e-87
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            VEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DP
Sbjct:  214 VEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDP 274

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.550e-86
Identity = 120/141 (85.11%), Postives = 126/141 (89.36%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED L
Sbjct:   73 GNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213

HSP 2 Score: 107.071 bits (266), Expect = 1.550e-86
Identity = 49/61 (80.33%), Postives = 59/61 (96.72%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            VEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DP
Sbjct:  214 VEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDP 274

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.489e-86
Identity = 118/141 (83.69%), Postives = 127/141 (90.07%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDL
Sbjct:   74 GNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDL 214

HSP 2 Score: 107.842 bits (268), Expect = 4.489e-86
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            VEKFA+GVSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP
Sbjct:  215 VEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDP 275

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.698e-82
Identity = 114/141 (80.85%), Postives = 124/141 (87.94%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL
Sbjct:   74 GNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDL 214

HSP 2 Score: 101.293 bits (251), Expect = 1.698e-82
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            +EKFASGVSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DP
Sbjct:  215 MEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDP 275

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 7.658e-80
Identity = 113/141 (80.14%), Postives = 121/141 (85.82%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL
Sbjct:   74 GNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDL 214

HSP 2 Score: 100.908 bits (250), Expect = 7.658e-80
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            +EKFA+GVSMV +L+LAISYPTLAA PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DP
Sbjct:  215 IEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDP 275

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.351e-63
Identity = 129/171 (75.44%), Postives = 137/171 (80.12%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLSGEVRLRCINGHRSGTCHLIPNPGSCSTHV 513
            GN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL  +  +     + S T H IPNP S + HV
Sbjct:   74 GNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNP-SAAPHV 243

HSP 2 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 2

Query:  425 VEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            +EKFA GVS       +   P  +AAPH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DP
Sbjct:  215 LEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDP 275

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.676e-61
Identity = 109/141 (77.30%), Postives = 117/141 (82.98%), Query Frame = 1

Query:    1 GNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            GN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL
Sbjct:   74 GNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDL 214

HSP 2 Score: 48.1358 bits (113), Expect = 3.676e-61
Identity = 22/26 (84.62%), Postives = 26/26 (100.00%), Query Frame = 2

Query:  431 KFASGVSMVTALALAISYPTLAAAPH 508
            +FA+GVSMVT+L+LAISYPTLAAAPH
Sbjct:  217 RFATGVSMVTSLSLAISYPTLAAAPH 242

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.301e-54
Identity = 80/140 (57.14%), Postives = 99/140 (70.71%), Query Frame = 1

Query:    4 NTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L
Sbjct:   72 NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDAL 211

HSP 2 Score: 73.9442 bits (180), Expect = 2.301e-54
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 2

Query:  428 EKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            ++F  GV  + ++ L I YPTLA+ PH  IN YK V+ VA+ T+YSFP ADKVK +LADP
Sbjct:  213 KRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADP 272

[Close]

BLAST of CF417338 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.086e-52
Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = 1

Query:    4 NTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDL 423
            N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L
Sbjct:   72 NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETL 211

HSP 2 Score: 72.4034 bits (176), Expect = 2.086e-52
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 2

Query:  419 TXVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADP 607
            T  ++F  GV  V ++ L I YPT+A+ PH  +N YK V+AVA+ T+Y+FP A+KVK +LADP
Sbjct:  210 TLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADP 272

The following BLAST results are available for this feature:

BLAST of CF417338 vs. ExPASy Swiss-Prot

BLAST of CF417338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
RLA0_SOYBN	2.412e-87	85.42	60S acidic ribosomal protein P0 OS=Glycine max PE=...	[more]
RLA02_ARATH	2.412e-87	85.11	60S acidic ribosomal protein P0-2 OS=Arabidopsis t...	[more]
RLA03_ARATH	1.550e-86	85.11	60S acidic ribosomal protein P0-3 OS=Arabidopsis t...	[more]
RLA01_ARATH	4.489e-86	83.69	60S acidic ribosomal protein P0-1 OS=Arabidopsis t...	[more]
RLA0_ORYSJ	1.698e-82	80.85	60S acidic ribosomal protein P0 OS=Oryza sativa su...	[more]
RLA0_MAIZE	7.658e-80	80.14	60S acidic ribosomal protein P0 OS=Zea mays GN=RP-...	[more]
RLA0_LUPLU	7.351e-63	75.44	60S acidic ribosomal protein P0 OS=Lupinus luteus ...	[more]
RLA0_CHERU	3.676e-61	77.30	60S acidic ribosomal protein P0 OS=Chenopodium rub...	[more]
RLA0_ICTPU	2.301e-54	57.14	60S acidic ribosomal protein P0 OS=Ictalurus punct...	[more]
RLA0_CHICK	2.086e-52	54.29	60S acidic ribosomal protein P0 OS=Gallus gallus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-268 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417338 ID=CF417338; Name=CF417338; organism=Citrus sinensis; type=EST; length=609bp
GGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGG
GTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTA
AGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGAT
GTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTT
CTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAA
TTATCACACCTGTGGAGCTTATCAGGAAGGGTGACAAGGTGGGATCTTCT
GAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCT
TGTTGTCCAGTCTGTCTATGAAAACGGTTCTGTCTACAGCCCAGAGGTCC
TTGACCTGTCTGAAGATGACCTNAGTGGAGAAGTTCGCCTCAGGTGTATC
AATGGTCACCGCTCTGGCACTTGCCATCTCATACCCAACCCTGGCAGCTG
CTCCACACATGTTCATCAATGCATACAAGAATGTGGTTGCTGTTGCTCTT
GCAACTGAGTATTCATTCCCTCAGGCTGACAAAGTGAAGGAGTACCTGGC
GGACCCAAG