CF417339

Overview
NameCF417339
Unique NameCF417339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9997 contig Csv1_Contig9997:100..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_CORGL (GTP pyrophosphokinase OS=Corynebacterium glutamicum GN=relA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCEA 332
            G+R++V+N  +CY A+ VVH L+  +PG+ KDYI+ P+F  YQSLHT V G G  PLEVQ RT +MH  AEFG AAHWRYKE    HS     +  + W R +L WQ EA
Sbjct:  292 GIRILVDNVNNCYAAIGVVHSLFNALPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKETKGSHSGEQAEVDQMAWMRQLLDWQKEA 401          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3
Query:    3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQ 323
            +  +R+IV+  +DCY AL +VH  +  +P +  DY+  PK NGYQS+HTVV G+G  P+EVQIRT++MH  AE G AAHW+YKEG+    S   + + W R +L WQ
Sbjct:  278 VRAVRIIVQKLQDCYTALGIVHTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWKYKEGNTGSMSAYEEKIAWLRKLLAWQ 384          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCLE (Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332
            G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  317 GIRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 430          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCTU (Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332
            G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  320 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCBO (Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332
            G+R++ +   DCY A+ VVH LW  + G+ KDYI +P++  YQSLHT V G    PLEVQIRT++MH  AE+G AAHWRYKE   +      H++  +  + W R +L WQ EA
Sbjct:  320 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: SPOT_SYNY3 (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803) GN=spoT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 3
Query:    3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 329
            I  LR+IVE++ +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT+EMH  AE+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct:  292 IAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_STRCO (GTP pyrophosphokinase OS=Streptomyces coelicolor GN=relA PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.527e-24
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV---------------LQMVEWARWVLTWQCE 329
            G+R++V+   DCY AL  VH  W  VPG+ KDYI  PKFN YQSLHT V G G  P+E+QIRT +MH +AE+G AAHW+YK+     +S V               L  + W R +L WQ E
Sbjct:  364 GIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVAGASKVRTDAPKSSGKSKDDHLNDMAWLRQLLDWQKE 485          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24
Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 3
Query:    9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV--------------LQMVEWARWVLTWQCE 329
            G+R++V+   DCY AL  VH  W  VPG+ KDYI  PKFN YQSLHT V G    P+E+QIRT +MH +AE+G AAHW+YK+     +S V              L  + W R +L WQ E
Sbjct:  361 GIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVARASKVRTDVPKPAKGKDDHLNDMAWLRQLLDWQKE 481          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 3
Query:    3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCE 329
            +  +R++ E  +DCY AL VVH  +  +P +  DY+  PK NGYQS+HTVV G     +E+QIRTK+MH ++E G AAHW+YKEG       S   + + W R +L WQ E
Sbjct:  275 VRAVRIVAEELQDCYAALGVVHTKYRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKEGTASGGAQSAYDEKINWLRKLLAWQEE 385          
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_BACSU (GTP pyrophosphokinase OS=Bacillus subtilis GN=relA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.387e-22
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   12 LRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQ-MVEWARWVLTWQCEA 332
            +R++V + +DCY  L ++H  W  +PG+ KDYI  PK N YQSLHT V G    PLEVQIRT EMH  AE+G AAHW YKEG   +     +  + W R +L +Q E+
Sbjct:  268 VRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKEGKAANEGATFEKKLSWFREILEFQNES 375          
The following BLAST results are available for this feature:
BLAST of CF417339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RELA_CORGL5.441e-2752.73GTP pyrophosphokinase OS=Corynebacterium glutamicu... [more]
RELA_HAEIN7.856e-2648.60GTP pyrophosphokinase OS=Haemophilus influenzae GN... [more]
RELA_MYCLE3.899e-2547.37Probable GTP pyrophosphokinase OS=Mycobacterium le... [more]
RELA_MYCTU5.092e-2547.37Probable GTP pyrophosphokinase OS=Mycobacterium tu... [more]
RELA_MYCBO5.092e-2547.37Probable GTP pyrophosphokinase OS=Mycobacterium bo... [more]
SPOT_SYNY31.482e-2450.00Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
RELA_STRCO2.527e-2446.72GTP pyrophosphokinase OS=Streptomyces coelicolor G... [more]
RELA_STRAT5.630e-2446.28GTP pyrophosphokinase OS=Streptomyces antibioticus... [more]
RELA_PHOAS1.062e-2245.05GTP pyrophosphokinase OS=Photobacterium angustum (... [more]
RELA_BACSU1.387e-2248.15GTP pyrophosphokinase OS=Bacillus subtilis GN=relA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-269 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417339 ID=CF417339; Name=CF417339; organism=Citrus sinensis; type=EST; length=642bp
ATATCCATGGTCTTCGTTTAATTGTTGAAAATGAGGAAGACTGCTACCAA
GCACTGAGAGTTGTTCATCAGTTGTGGGCTGAAGTACCTGGAAAGATGAA
GGATTACATAACCCGGCCCAAGTTCAACGGGTATCAGTCGCTTCACACAG
TGGTGACAGGTGAAGGTCTGGTTCCACTTGAAGTTCAAATCCGAACAAAA
GAGATGCATTTGCAGGCTGAGTTTGGGTTTGCTGCTCATTGGAGATACAA
AGAAGGTGATTGCCAGCATTCTTCTTTTGTGCTTCAGATGGTTGAGTGGG
CTAGATGGGTTCTTACCTGGCAGTGTGAGGCAATGAGCAAAGATCGTTCT
TGTGTTGGCAATGGTGACTCCATCAAGCCACCATGCACGTTTCCCTCACA
TGCTGATGATTGCCCATTTTCTTATAAGCCTCAGTGCAGCCATGATGGAC
CTGTCTTTGTCATCATGATTGAGAATGATAAGATGTCAGTGCAGGAGTTT
CCTACAAACTCCACAGTAATGGATTTGCTGGAAAGAGCCGGNACGGGGAA
GCTCAAGATGGTCGCCGTATGGGTTCCCTCTGAAGGAAGAATTGAGGCCA
AGGCTGAACCACAAGGCAGTAGGTGATCCCAGATGTAATTGA
back to top