CF417339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_CORGL (GTP pyrophosphokinase OS=Corynebacterium glutamicum GN=relA PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 5.441e-27 Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--SFVLQMVEWARWVLTWQCEA 332 G+R++V+N +CY A+ VVH L+ +PG+ KDYI+ P+F YQSLHT V G G PLEVQ RT +MH AEFG AAHWRYKE HS + + W R +L WQ EA Sbjct: 292 GIRILVDNVNNCYAAIGVVHSLFNALPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKETKGSHSGEQAEVDQMAWMRQLLDWQKEA 401
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.856e-26 Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3 Query: 3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQ 323 + +R+IV+ +DCY AL +VH + +P + DY+ PK NGYQS+HTVV G+G P+EVQIRT++MH AE G AAHW+YKEG+ S + + W R +L WQ Sbjct: 278 VRAVRIIVQKLQDCYTALGIVHTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWKYKEGNTGSMSAYEEKIAWLRKLLAWQ 384
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCLE (Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25 Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332 G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQIRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA Sbjct: 317 GIRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 430
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCTU (Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25 Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332 G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQIRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA Sbjct: 320 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_MYCBO (Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25 Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ------HSSFVLQMVEWARWVLTWQCEA 332 G+R++ + DCY A+ VVH LW + G+ KDYI +P++ YQSLHT V G PLEVQIRT++MH AE+G AAHWRYKE + H++ + + W R +L WQ EA Sbjct: 320 GVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDMAWMRQLLDWQREA 433
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: SPOT_SYNY3 (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803) GN=spoT PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24 Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 3 Query: 3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 329 I LR+IVE++ +CY+AL VVH ++ +PG+ KDYI PK N YQSLHT V G PLE+QIRT+EMH AE+G AAHW+YKE ++ + E W R +L WQ + Sbjct: 292 IAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_STRCO (GTP pyrophosphokinase OS=Streptomyces coelicolor GN=relA PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.527e-24 Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV---------------LQMVEWARWVLTWQCE 329 G+R++V+ DCY AL VH W VPG+ KDYI PKFN YQSLHT V G G P+E+QIRT +MH +AE+G AAHW+YK+ +S V L + W R +L WQ E Sbjct: 364 GIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVAGASKVRTDAPKSSGKSKDDHLNDMAWLRQLLDWQKE 485
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.630e-24 Identity = 56/121 (46.28%), Postives = 71/121 (58.68%), Query Frame = 3 Query: 9 GLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFV--------------LQMVEWARWVLTWQCE 329 G+R++V+ DCY AL VH W VPG+ KDYI PKFN YQSLHT V G P+E+QIRT +MH +AE+G AAHW+YK+ +S V L + W R +L WQ E Sbjct: 361 GIRVLVDTVRDCYAALGTVHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHWKYKQEAVARASKVRTDVPKPAKGKDDHLNDMAWLRQLLDWQKE 481
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22 Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 3 Query: 3 IHGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCE 329 + +R++ E +DCY AL VVH + +P + DY+ PK NGYQS+HTVV G +E+QIRTK+MH ++E G AAHW+YKEG S + + W R +L WQ E Sbjct: 275 VRAVRIVAEELQDCYAALGVVHTKYRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKEGTASGGAQSAYDEKINWLRKLLAWQEE 385
BLAST of CF417339 vs. ExPASy Swiss-Prot
Match: RELA_BACSU (GTP pyrophosphokinase OS=Bacillus subtilis GN=relA PE=3 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.387e-22 Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 12 LRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQ-MVEWARWVLTWQCEA 332 +R++V + +DCY L ++H W +PG+ KDYI PK N YQSLHT V G PLEVQIRT EMH AE+G AAHW YKEG + + + W R +L +Q E+ Sbjct: 268 VRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKEGKAANEGATFEKKLSWFREILEFQNES 375 The following BLAST results are available for this feature:
BLAST of CF417339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417339 ID=CF417339; Name=CF417339; organism=Citrus sinensis; type=EST; length=642bpback to top |