CF417351

Overview
NameCF417351
Unique NameCF417351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11948 contig Csv1_Contig11948:36..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417351 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.778e-65
Identity = 119/187 (63.64%), Postives = 141/187 (75.40%), Query Frame = 1 
Query:   82 RTVEHLDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 633
            R V  L  +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHSGYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQ
Sbjct:   21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQ 207
[Close]
BLAST of CF417351 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.534e-61
Identity = 108/174 (62.07%), Postives = 135/174 (77.59%), Query Frame = 1 
Query:  127 TKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 633
            + RRH  R +V  +++ +V        +  P+Y PTP++R LRTPHSGYHFDG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   + PRFTGVG QILGADDKY+C +SE+S+NFWGSRHELMLGNTF ++K S PP  EVPPQ+F+RRVLEG QVTP+WHQ
Sbjct:   23 SSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYICQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQ 196
The following BLAST results are available for this feature:
BLAST of CF417351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH3.778e-6563.64Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE2.534e-6162.07Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-281 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417351 ID=CF417351; Name=CF417351; organism=Citrus sinensis; type=EST; length=633bp
GCGTACCCGCGGTTTTTTCACTTCACATTTCTCTGTTTTCAGATGGAATC
AAATCTTTGCTTCTCACAAAACTTAGGGTTCCGAACTGTAGAGCACCTCG
ACTCTACTCTTAGACCCTTGCTTTATACAAAACGCCGTCATTTCAACAGA
GTGTTGGTGTTGGCTTCTTCAGCTCAAACTGTGGGCGGAGTCTCCGTCAA
TCCTGTTTATAAGCCAACGCCACGCAATCGAGAGCTTCGAACTCCTCACA
GCGGGTACCATTTTGATGGGAGTACTCGTAGGTTTTTTGAGGGTTGGTAT
TTTAGGGTCTCAATTCCAGAGCGAAAGCAAAGCTTTTGCATTATTTATTC
GGTGGAGAATCCTGCATTTAAGAAAAAATTATCGTCATTGGAAGTTGCAC
AGCATGGACCTAGATTTACAGGAGTTGGGGTTCAAATTCTTGGTGCCGAT
GACAAGTATATGTGCCATTACTCTGAAGAGTCTTCAAACTTTTGGGGAAG
TAGGCACGAGCTGATGCTGGGGAATACTTTCAGAGCTGATAAAGGTTCAC
AGCCTCCAACTAAGGAGGTTCCTCCTCAGGAATTTAACAGAAGAGTGTTG
GAAGGTTTTCAAGTCACCCCACTGTGGCACCAG
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