CF417356

Overview
NameCF417356
Unique NameCF417356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTM_ARATH (Threonyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 2.907e-71
Identity = 134/172 (77.91%), Postives = 146/172 (84.88%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 517
            KIDI+VSDA+ RKFQCATLQLDFQLP RFNL Y+AEDEAK  RPVMIHRA+LGSVERMFAILLEHYKGKWPFW+SPRQAIVCP+SEKSQ YA +V+  I  AG+YVD D TDRKI KKVREAQLAQYN+ILVVGE EA +GQVSVRVRD   HS  SIEDLL+ FK K   F
Sbjct:  537 KIDITVSDAMNRKFQCATLQLDFQLPIRFNLEYAAEDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 708          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_ARATH (Probable threonyl-tRNA synthetase, cytoplasmic OS=Arabidopsis thaliana GN=At1g17960 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.156e-52
Identity = 107/176 (60.80%), Postives = 129/176 (73.30%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD----QGDHSNMSIEDLLKHFKEKLEAF 517
            KIDI+VSDA  RKFQCAT+QLDFQLP  F L Y +E   + E PVMIH A+LGS+ERMFAILLEHYKG WPFWLSPRQAIVC +SE    YA QV+  I   GYYVD+D +DR ++KKV +A+ A YN+ILVVG++E  +GQV+VR+R+    + D   MSIE LL  FK K   F
Sbjct:  283 KIDITVSDARNRKFQCATIQLDFQLPACFKLKYLSEKN-EMEAPVMIHSAVLGSIERMFAILLEHYKGIWPFWLSPRQAIVCSLSEDCSSYAKQVQKQINEVGYYVDIDESDRSLRKKVADARDAPYNYILVVGQKEVATGQVTVRLREDPEGRKDLPEMSIESLLDEFKFKTVNF 457          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC1_DICDI (Probable threonyl-tRNA synthetase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.404e-49
Identity = 97/174 (55.75%), Postives = 127/174 (72.99%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE-RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 520
            KIDI ++D LKR  QCAT+QLDFQLP RF+L Y ++D A+ + RPV+IHRAILGSVERM AIL+EH  GKWP W+SPRQAIV  V++    Y  +V   I  AG+Y D+D +D+ I KKVREAQLAQYN+ILVVG+EE     V+VR RD     ++++ DL+  FK+ ++ F+
Sbjct:  537 KIDIHITDCLKRSHQCATIQLDFQLPIRFDLEYQSDDAAELKKRPVIIHRAILGSVERMMAILIEHTGGKWPLWVSPRQAIVVTVNKTHNEYGQKVCKEISDAGFYCDIDDSDKTISKKVREAQLAQYNYILVVGQEEINGNTVNVRTRDNVVRGSLTVNDLISEFKQLVKEFK 710          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_YEAST (Threonyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=THS1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.128e-49
Identity = 97/172 (56.40%), Postives = 125/172 (72.67%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKT--ERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD----QGDHSNMSIEDLLKHFK 499
            KIDI +SDAL+R  QCAT+QLDFQLP+RF L + ++D+     ERPVMIHRAILGSVERM AIL EH+ GKWPFWLSPRQ +V PV  K Q YA  VR+ ++ AG+Y DVD T   +QKKVR  Q+ +YNFI +VGE+E     V++R RD    QG ++ +S+E++LK  +
Sbjct:  550 KIDIMISDALRRWHQCATIQLDFQLPNRFELEFKSKDQDSESYERPVMIHRAILGSVERMTAILTEHFAGKWPFWLSPRQVLVVPVGVKYQGYAEDVRNKLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNATVSVEEVLKQLR 721          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC2_MOUSE (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Mus musculus GN=Tarsl2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 94/167 (56.29%), Postives = 114/167 (68.26%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 499
            KIDI + DA+ R  QCAT+QLDFQLP RFNL Y ++D     RPV+IHRAILGSVERM AIL E+Y GKWP WLSPRQ +V PV    + YALQV    +  G+  DVD  D   + KK+R AQLAQYNFILVVGE+E  +  V+VR RD   H  +SI  +++  K
Sbjct:  610 KIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKNRPVIIHRAILGSVERMIAILSENYGGKWPLWLSPRQVMVIPVGPACENYALQVSKECFEEGFMADVDLDDSCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNKIHGEISIASVIEKLK 776          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_MOUSE (Threonyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Tars PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502
            KIDI + DA+ R  QCAT+QLDFQLP RFNL Y + D    +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV      YA +VR   + A +  D D      + KK+R AQLAQYNFILVVGE+E  SG V++R RD   H   ++E+ ++  ++
Sbjct:  542 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETVRRLQQ 709          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_RAT (Threonyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Tars PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502
            KIDI + DA+ R  QCAT+QLDFQLP RFNL Y + D    +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV      YA +VR   + A + VD+D      + KK+R AQLAQYNFILVVGE+E  SG V++R RD   H   ++ + ++  ++
Sbjct:  515 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVGETVERLQQ 682          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_BOVIN (Threonyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502
            KIDI + DA+ R  QCAT+QLDFQLP RFNL + + D    ++PV+IHRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV      YA +VR   + A + VD+D      + KK+R AQLAQYNFILVVGE+E  SG V++R RD   H   +I + ++  ++
Sbjct:  543 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSHDGDDKKKPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHNAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTISETIERLQQ 710          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_HUMAN (Threonyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44
Identity = 91/171 (53.22%), Postives = 115/171 (67.25%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511
            KIDI + DA+ R  QCAT+QLDFQLP RFNL Y + D    +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV      YA +VR   + A +  D+D      + KK+R AQLAQYNFILVVGE+E  SG V++R RD   H   +I + ++  ++  E
Sbjct:  543 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKE 713          
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC2_HUMAN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Homo sapiens GN=TARSL2 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.360e-44
Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 2
Query:    2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 499
            KIDI + DA+ R  QCAT+QLDFQLP RFNL Y ++D    +RPV+IHRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV    + YALQV    +  G+  DVD      + KK+R AQLAQYNFILVVGE+E     V+VR RD   H  + +   +   K
Sbjct:  622 KIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKRPVIIHRAILGSVERMIAILSENYGGKWPFWLSPRQVMVIPVGPTCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNKIHGEILVTSAIDKLK 788          
The following BLAST results are available for this feature:
BLAST of CF417356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYTM_ARATH2.907e-7177.91Threonyl-tRNA synthetase, mitochondrial OS=Arabido... [more]
SYTC_ARATH5.156e-5260.80Probable threonyl-tRNA synthetase, cytoplasmic OS=... [more]
SYTC1_DICDI1.404e-4955.75Probable threonyl-tRNA synthetase 1, cytoplasmic O... [more]
SYTC_YEAST3.128e-4956.40Threonyl-tRNA synthetase, cytoplasmic OS=Saccharom... [more]
SYTC2_MOUSE1.230e-4556.29Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC_MOUSE6.104e-4553.57Threonyl-tRNA synthetase, cytoplasmic OS=Mus muscu... [more]
SYTC_RAT7.972e-4553.57Threonyl-tRNA synthetase, cytoplasmic OS=Rattus no... [more]
SYTC_BOVIN7.972e-4553.57Threonyl-tRNA synthetase, cytoplasmic OS=Bos tauru... [more]
SYTC_HUMAN1.041e-4453.22Threonyl-tRNA synthetase, cytoplasmic OS=Homo sapi... [more]
SYTC2_HUMAN1.360e-4455.09Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-286 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417356 ID=CF417356; Name=CF417356; organism=Citrus sinensis; type=EST; length=662bp
AAAGATTGATATCAGTGTATCTGATGCATTGAAGAGGAAATTCCAGTGTG
CTACTTTGCAGCTTGACTTTCAGCTTCCTGATCGTTTCAACTTGGGTTAC
TCAGCGGAAGATGAAGCCAAGACAGAGAGACCTGTTATGATACACAGAGC
GATATTGGGGTCTGTTGAACGTATGTTTGCTATACTGTTGGAACATTACA
AGGGGAAGTGGCCTTTTTGGCTCAGTCCACGTCAAGCAATTGTTTGCCCT
GTGTCAGAGAAATCCCAACCATATGCTTTACAGGTGCGGGATCATATTTA
TCGAGCCGGTTATTATGTTGATGTGGATACAACAGACAGAAAGATTCAGA
AAAAGGTACGGGAAGCACAGTTGGCACAGTATAATTTTATATTGGTGGTT
GGTGAAGAGGAAGCCAAAAGTGGACAGGTTAGTGTCCGGGTGAGAGATCA
GGGTGACCATTCAAATATGAGCATCGAGGACCTACTAAAACACTTCAAGG
AAAAACTTGAAGCATTTCAATAGGACGCTTAACCATTGAAGTGGAATGCA
AATTTTCATTAAAACACCTCATAAAGACAAGAAAGAGCTGCTAGAAATTA
TTCACTCGATTATTCCCTACTTGTTTGAAATCAAAATCAGATTTTGATTT
GTAAGGCAGATT
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