CF417356
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTM_ARATH (Threonyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3) HSP 1 Score: 268.085 bits (684), Expect = 2.907e-71 Identity = 134/172 (77.91%), Postives = 146/172 (84.88%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 517 KIDI+VSDA+ RKFQCATLQLDFQLP RFNL Y+AEDEAK RPVMIHRA+LGSVERMFAILLEHYKGKWPFW+SPRQAIVCP+SEKSQ YA +V+ I AG+YVD D TDRKI KKVREAQLAQYN+ILVVGE EA +GQVSVRVRD HS SIEDLL+ FK K F Sbjct: 537 KIDITVSDAMNRKFQCATLQLDFQLPIRFNLEYAAEDEAKKSRPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAKTAEF 708
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_ARATH (Probable threonyl-tRNA synthetase, cytoplasmic OS=Arabidopsis thaliana GN=At1g17960 PE=2 SV=2) HSP 1 Score: 204.142 bits (518), Expect = 5.156e-52 Identity = 107/176 (60.80%), Postives = 129/176 (73.30%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD----QGDHSNMSIEDLLKHFKEKLEAF 517 KIDI+VSDA RKFQCAT+QLDFQLP F L Y +E + E PVMIH A+LGS+ERMFAILLEHYKG WPFWLSPRQAIVC +SE YA QV+ I GYYVD+D +DR ++KKV +A+ A YN+ILVVG++E +GQV+VR+R+ + D MSIE LL FK K F Sbjct: 283 KIDITVSDARNRKFQCATIQLDFQLPACFKLKYLSEKN-EMEAPVMIHSAVLGSIERMFAILLEHYKGIWPFWLSPRQAIVCSLSEDCSSYAKQVQKQINEVGYYVDIDESDRSLRKKVADARDAPYNYILVVGQKEVATGQVTVRLREDPEGRKDLPEMSIESLLDEFKFKTVNF 457
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC1_DICDI (Probable threonyl-tRNA synthetase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.404e-49 Identity = 97/174 (55.75%), Postives = 127/174 (72.99%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE-RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 520 KIDI ++D LKR QCAT+QLDFQLP RF+L Y ++D A+ + RPV+IHRAILGSVERM AIL+EH GKWP W+SPRQAIV V++ Y +V I AG+Y D+D +D+ I KKVREAQLAQYN+ILVVG+EE V+VR RD ++++ DL+ FK+ ++ F+ Sbjct: 537 KIDIHITDCLKRSHQCATIQLDFQLPIRFDLEYQSDDAAELKKRPVIIHRAILGSVERMMAILIEHTGGKWPLWVSPRQAIVVTVNKTHNEYGQKVCKEISDAGFYCDIDDSDKTISKKVREAQLAQYNYILVVGQEEINGNTVNVRTRDNVVRGSLTVNDLISEFKQLVKEFK 710
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_YEAST (Threonyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=THS1 PE=1 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 3.128e-49 Identity = 97/172 (56.40%), Postives = 125/172 (72.67%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKT--ERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRD----QGDHSNMSIEDLLKHFK 499 KIDI +SDAL+R QCAT+QLDFQLP+RF L + ++D+ ERPVMIHRAILGSVERM AIL EH+ GKWPFWLSPRQ +V PV K Q YA VR+ ++ AG+Y DVD T +QKKVR Q+ +YNFI +VGE+E V++R RD QG ++ +S+E++LK + Sbjct: 550 KIDIMISDALRRWHQCATIQLDFQLPNRFELEFKSKDQDSESYERPVMIHRAILGSVERMTAILTEHFAGKWPFWLSPRQVLVVPVGVKYQGYAEDVRNKLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKNATVSVEEVLKQLR 721
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC2_MOUSE (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Mus musculus GN=Tarsl2 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45 Identity = 94/167 (56.29%), Postives = 114/167 (68.26%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 499 KIDI + DA+ R QCAT+QLDFQLP RFNL Y ++D RPV+IHRAILGSVERM AIL E+Y GKWP WLSPRQ +V PV + YALQV + G+ DVD D + KK+R AQLAQYNFILVVGE+E + V+VR RD H +SI +++ K Sbjct: 610 KIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKNRPVIIHRAILGSVERMIAILSENYGGKWPLWLSPRQVMVIPVGPACENYALQVSKECFEEGFMADVDLDDSCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNVRTRDNKIHGEISIASVIEKLK 776
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_MOUSE (Threonyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Tars PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45 Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502 KIDI + DA+ R QCAT+QLDFQLP RFNL Y + D +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV YA +VR + A + D D + KK+R AQLAQYNFILVVGE+E SG V++R RD H ++E+ ++ ++ Sbjct: 542 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVEETVRRLQQ 709
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_RAT (Threonyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Tars PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45 Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502 KIDI + DA+ R QCAT+QLDFQLP RFNL Y + D +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV YA +VR + A + VD+D + KK+R AQLAQYNFILVVGE+E SG V++R RD H ++ + ++ ++ Sbjct: 515 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTVGETVERLQQ 682
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_BOVIN (Threonyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45 Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 502 KIDI + DA+ R QCAT+QLDFQLP RFNL + + D ++PV+IHRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV YA +VR + A + VD+D + KK+R AQLAQYNFILVVGE+E SG V++R RD H +I + ++ ++ Sbjct: 543 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSHDGDDKKKPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHNAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNIRTRDNKVHGERTISETIERLQQ 710
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC_HUMAN (Threonyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3) HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44 Identity = 91/171 (53.22%), Postives = 115/171 (67.25%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 511 KIDI + DA+ R QCAT+QLDFQLP RFNL Y + D +RPV++HRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV YA +VR + A + D+D + KK+R AQLAQYNFILVVGE+E SG V++R RD H +I + ++ ++ E Sbjct: 543 KIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKE 713
BLAST of CF417356 vs. ExPASy Swiss-Prot
Match: SYTC2_HUMAN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Homo sapiens GN=TARSL2 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.360e-44 Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 2 Query: 2 KIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 499 KIDI + DA+ R QCAT+QLDFQLP RFNL Y ++D +RPV+IHRAILGSVERM AIL E+Y GKWPFWLSPRQ +V PV + YALQV + G+ DVD + KK+R AQLAQYNFILVVGE+E V+VR RD H + + + K Sbjct: 622 KIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKRPVIIHRAILGSVERMIAILSENYGGKWPFWLSPRQVMVIPVGPTCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNKIHGEILVTSAIDKLK 788 The following BLAST results are available for this feature:
BLAST of CF417356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417356 ID=CF417356; Name=CF417356; organism=Citrus sinensis; type=EST; length=662bpback to top |