CF417357

Overview
NameCF417357
Unique NameCF417357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417357_ssr161 microsatellite CF417357_ssr161:161..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF417357 vs. ExPASy Swiss-Prot
Match: IQD1_ARATH (Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:    1 VRMSIEGQAV-QDMMDKRRSQADILKEAEEGWCDSKGTLEDVKTKIQMRQEGAFKRERAIAYSLAQKQWTSNQNSNSRTNGSISSLKNQEFDKNSWGWSWLERWMAARPWETRLMEQSQADPSDSIPPLKSCADSLVGTRSRSS 429
            +RMS E QA  + ++ K   +   LK     W  S  + E V+  +  + E   +RERA+AY+   +Q   N  S S+T   +      +    +WGWSWLERWMA RPWE+   EQ+  +  +S     +  +S  G  ++SS
Sbjct:  171 IRMSEENQARHKQLLQKHAKELGGLKNGGN-WNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQ---NLKSFSKTANPMF----MDPSNPTWGWSWLERWMAGRPWESSEKEQNTTNNDNSSVKNSTNRNSQGGETAKSS 306
The following BLAST results are available for this feature:
BLAST of CF417357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD1_ARATH1.216e-1132.64Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-287 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417357 ID=CF417357; Name=CF417357; organism=Citrus sinensis; type=EST; length=675bp
GTCAGAATGTCCATAGAGGGGCAAGCTGTGCAGGACATGATGGATAAAAG
ACGCAGCCAAGCTGATATCTTAAAAGAAGCTGAGGAAGGGTGGTGTGATA
GTAAAGGAACATTGGAAGATGTTAAGACAAAGATTCAAATGAGGCAAGAA
GGTGCATTCAAGAGAGAGAGAGCAATTGCATACTCTCTGGCTCAAAAGCA
ATGGACTTCAAACCAAAATTCCAACAGCCGAACAAATGGCTCCATTTCCT
CTCTAAAGAATCAAGAATTTGACAAGAATAGCTGGGGATGGAGCTGGCTG
GAGCGTTGGATGGCTGCCAGGCCATGGGAGACTCGATTGATGGAACAATC
GCAGGCTGATCCTTCAGACAGTATTCCACCCTTGAAGAGTTGTGCTGACT
CACTTGTAGGTACACGTTCTAGATCTTCTGAACCATGCCCTGTGAAGATC
AGAAAGAACAATGTCACCACCAGGATTTCTGCAAAACCTCCCCATATGGG
ACAAGCTACTCGTTCTTCTTCGAGCCCAAGTTCTGAGTTTCGATATGATG
AGAGCTCAGCTTCATCTTCAATATGCACTTCTACAACTCCCATATCTGGA
AACACTGGCTTAGCTTCTGAAAGAACAGAAGGAGAGCGGTAATAGTAGAC
CAAACTACATGAACCTTACTGAGTC
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