CF417362

Overview
NameCF417362
Unique NameCF417362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417362_ssr1 microsatellite CF417362_ssr1:1..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 7.483e-14
Identity = 34/102 (33.33%), Postives = 49/102 (48.04%), Query Frame = 3
Query:   21 EKGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYGS 326
            +KG+L+GRG+FGSVY G +                                     G   A+KEV ++    ++ ECI+Q E EIKLL  L+H+NIV+Y G+
Sbjct:  334 QKGQLLGRGSFGSVYEGISG-----------------------------------DGDFFAVKEVSLLDQGSQAQECIQQLEGEIKLLSQLQHQNIVRYRGT 400          

HSP 2 Score: 43.8986 bits (102), Expect = 7.483e-14
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 2
Query:  431 HLYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            +LYI+LE V  GS+ +  + +   + +S+V  +TRQIL+G+ YLH    IHR +
Sbjct:  406 NLYIFLELVTQGSLLKLYQRY--QLRDSVVSLYTRQILDGLKYLHDKGFIHRDI 457          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: M3K3_MOUSE (Mitogen-activated protein kinase kinase kinase 3 OS=Mus musculus GN=Map3k3 PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.722e-12
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  434 LYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            L I++EY+  GS+   ++ + G +TES+   +TRQIL G++YLHS   +HR +
Sbjct:  439 LTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLHSNMIVHRDI 490          

HSP 2 Score: 45.0542 bits (105), Expect = 1.722e-12
Identity = 30/100 (30.00%), Postives = 47/100 (47.00%), Query Frame = 3
Query:   24 KGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYG 323
            +G+L+G+G FG VY+        C ++                          +TG   A K+V    D P++++ +   E EI+LL +L+HE IVQYYG
Sbjct:  364 RGKLLGQGAFGRVYL--------CYDV--------------------------DTGRELASKQVQFDPDSPETSKEVSALECEIQLLKNLQHERIVQYYG 429          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: M3K3_HUMAN (Mitogen-activated protein kinase kinase kinase 3 OS=Homo sapiens GN=MAP3K3 PE=1 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 1.722e-12
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  434 LYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            L I++EY+  GS+   ++ + G +TES+   +TRQIL G++YLHS   +HR +
Sbjct:  439 LTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLHSNMIVHRDI 490          

HSP 2 Score: 45.0542 bits (105), Expect = 1.722e-12
Identity = 30/100 (30.00%), Postives = 47/100 (47.00%), Query Frame = 3
Query:   24 KGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYG 323
            +G+L+G+G FG VY+        C ++                          +TG   A K+V    D P++++ +   E EI+LL +L+HE IVQYYG
Sbjct:  364 RGKLLGQGAFGRVYL--------CYDV--------------------------DTGRELASKQVQFDPDSPETSKEVSALECEIQLLKNLQHERIVQYYG 429          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: M3K2_HUMAN (Mitogen-activated protein kinase kinase kinase 2 OS=Homo sapiens GN=MAP3K2 PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 2.904e-12
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 2
Query:  434 LYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            L I++EY+  GSI   ++ + G +TE++   +TRQIL GV YLHS   +HR +
Sbjct:  433 LSIFMEYMPGGSIKDQLKAY-GALTENVTRKYTRQILEGVHYLHSNMIVHRDI 484          

HSP 2 Score: 45.0542 bits (105), Expect = 2.904e-12
Identity = 30/99 (30.30%), Postives = 46/99 (46.46%), Query Frame = 3
Query:   27 GELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYG 323
            G+L+G+G FG VY+        C ++                          +TG   A+K+V    D P++++ +   E EI+LL +L HE IVQYYG
Sbjct:  359 GKLLGQGAFGRVYL--------CYDV--------------------------DTGRELAVKQVQFDPDSPETSKEVNALECEIQLLKNLLHERIVQYYG 423          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: ANP1_ARATH (Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2)

HSP 1 Score: 46.2098 bits (108), Expect = 6.344e-12
Identity = 32/104 (30.77%), Postives = 49/104 (47.12%), Query Frame = 3
Query:   24 KGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILD---DPKSAECIKQWEQEIKLLXHLKHENIVQYYGS 326
            KG+LIGRG FG+VY+G                                  +N ++G   A+K+V I  +     K+   I++ E+E+KLL +L H NIV+Y G+
Sbjct:   71 KGQLIGRGAFGTVYMG----------------------------------MNLDSGELLAVKQVLIAANFASKEKTQAHIQELEEEVKLLKNLSHPNIVRYLGT 140          

HSP 2 Score: 45.0542 bits (105), Expect = 6.344e-12
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 2
Query:  425 DDHLYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            DD L I LE+V  GSI+  + E  G   ES+V  +TRQ+L G+ YLH+   +HR +
Sbjct:  144 DDTLNILLEFVPGGSISSLL-EKFGPFPESVVRTYTRQLLLGLEYLHNHAIMHRDI 198          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: STE11_YEAS6 (Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=STE11 PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 2.334e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 2
Query:  431 HLYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            +L I+LEYV  GS++  +  + G   ES++ NFTRQIL GVAYLH    IHR +
Sbjct:  528 NLNIFLEYVPGGSVSSMLNNY-GPFEESLITNFTRQILIGVAYLHKKKIIHRDI 580          

HSP 2 Score: 36.1946 bits (82), Expect = 2.334e-11
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 3
Query:   24 KGELIGRGTFGSVYIGTNRYATIC*NLLVVS----CNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQ-----WEQEIKLLXHLKHENIVQYYGS 326
            KG  IG G+FGSVY+G N +      L+ V      N ++ +    +        N +      I++V  +   PK+ + I +      + E+ LL  L HENIV YYG+
Sbjct:  417 KGACIGSGSFGSVYLGMNAHTG---ELMAVKQVEIKNNNIGVSTDNNKQANSDENNEQEEQQEKIEDVGAV-SHPKTNQNIHRKMVDALQHEMNLLKELHHENIVTYYGA 522          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.832e-11
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  425 DDHLYIYLEYVHPGSINR-YVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            + +LYI+LE V  GS+ + Y R   GD   S+V  +TRQIL+G+ YLH    IHR +
Sbjct: 1697 ESNLYIFLELVTQGSLRKLYQRNQLGD---SVVSLYTRQILDGLKYLHDKGFIHRNI 1750          

HSP 2 Score: 40.817 bits (94), Expect = 3.832e-11
Identity = 30/102 (29.41%), Postives = 44/102 (43.14%), Query Frame = 3
Query:   21 EKGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYGS 326
            +KG+L+GRG+ GSVY G +                                     G   A KEV ++    ++ E I+Q E  I LL  L+H+NIV+Y G+
Sbjct: 1627 QKGQLLGRGSLGSVYEGISA-----------------------------------DGDFFAFKEVSLLDQGSQAHEWIQQVEGGIALLSQLQHQNIVRYRGT 1693          
BLAST of CF417362 vs. ExPASy Swiss-Prot
Match: M3K2_ARATH (Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.117e-11
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 3
Query:   24 KGELIGRGTFGSVYIGTNRYATIC*NLLVVSCNFSVNIIIVISLFFFFWGVNRETGASCAIKEVDIILDDPKSAECIKQWEQEIKLLXHLKHENIVQYYGS 326
            KG+LIGRG FG+VY+G N  +     LL V       ++I                ++CA KE        K+   I++ E+E+KLL +L H NIV+Y G+
Sbjct:   70 KGQLIGRGAFGTVYMGMNLDSG---ELLAVK-----QVLIT---------------SNCASKE--------KTQAHIQELEEEVKLLKNLSHPNIVRYLGT 139          

HSP 2 Score: 41.2022 bits (95), Expect = 5.117e-11
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 2
Query:  425 DDHLYIYLEYVHPGSINRYVREHCGDITESIVCNFTRQILNGVAYLHSTHTIHRTL 592
            D+ L I LE+V  GSI+  + E  G   ES+V  +T Q+L G+ YLH+   +HR +
Sbjct:  143 DETLNILLEFVPGGSISSLL-EKFGAFPESVVRTYTNQLLLGLEYLHNHAIMHRDI 197          
The following BLAST results are available for this feature:
BLAST of CF417362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
M3K1_ARATH7.483e-1433.33Mitogen-activated protein kinase kinase kinase 1 O... [more]
M3K3_MOUSE1.722e-1241.51Mitogen-activated protein kinase kinase kinase 3 O... [more]
M3K3_HUMAN1.722e-1241.51Mitogen-activated protein kinase kinase kinase 3 O... [more]
M3K2_HUMAN2.904e-1243.40Mitogen-activated protein kinase kinase kinase 2 O... [more]
ANP1_ARATH6.344e-1230.77Mitogen-activated protein kinase kinase kinase ANP... [more]
STE11_YEAS62.334e-1150.00Serine/threonine-protein kinase STE11 OS=Saccharom... [more]
WRK19_ARATH3.832e-1145.61Probable WRKY transcription factor 19 OS=Arabidops... [more]
M3K2_ARATH5.117e-1134.65Mitogen-activated protein kinase kinase kinase 2 O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-292 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417362 ID=CF417362; Name=CF417362; organism=Citrus sinensis; type=EST; length=657bp
GAGAGAGAGAGAGAGAGAGAGAGAAAGGTGAACTTATTGGACGTGGTACA
TTTGGGAGTGTTTATATTGGAACAAACCGGTATGCAACTATATGCTGAAA
TTTGCTAGTTGTTTCTTGTAATTTTTCAGTGAACATTATTATTGTTATTA
GTCTTTTTTTTTTTTTTTGGGGTGTTAACAGGGAGACTGGAGCTTCATGT
GCAATAAAGGAAGTTGATATTATTCTTGATGACCCCAAATCTGCCGAATG
CATAAAGCAATGGGAGCAGGAAATTAAACTTCTCCNTCATTTGAAGCATG
AAAATATAGTGCAGTATTATGGAAGTGAAGTGGTATATGCCTTTCCATGG
TATAGCTAGATGTGACCGCATTTGCTTTTGTGCATATTTGTGTAACTAAG
AGACTGTTGTTTCCATTTCTGGNTGATGATCACCTCTATATATATCTGGA
ATATGTCCATCCTGGCTCAATTAATAGATACGTCCGTGAACATTGCGGAG
ATATTACAGAAAGTATAGTTTGCAATTTCACCCGTCAAATTCTCAATGGG
GTGGCCTACCTGCATAGCACCCACACCATTCACAGGACTCTCCTATGAAT
TGTCACTGANGGGCAGCCCATATTGGGATGGCTCCAGAGGTCATGCAGGC
TGATATT
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