CF417363
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29 Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V++VK+IRN+ TG GY F+EF A AE L G P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G Sbjct: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159 HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL+ +MDE +++ FA Sbjct: 4 SLWMGDLEPYMDENFISRAFA 24
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29 Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V++VK+IRN+ TG GY F+EF A AE L G P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G Sbjct: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159 HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL+ +MDE +++ FA Sbjct: 4 SLWMGDLEPYMDENFISRAFA 24
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29 Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V++VK+IRN+ TG GY F+EF A AE L G P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G Sbjct: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159 HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL+ +MDE +++ FA Sbjct: 4 SLWMGDLEPYMDENFISRAFA 24
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 4.928e-29 Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V++VK+IRN+ TG GY F+EF A AE L G P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D TG +KGYGFV+F DE EQ RA+TE G Sbjct: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQG 159 HSP 2 Score: 29.6462 bits (65), Expect = 4.928e-29 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL+ +MDE +++ FA Sbjct: 4 SLWMGDLEPYMDENFISRAFA 24
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.416e-29 Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V++VK+IRN+ TG GY F+EF A AE L G P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G Sbjct: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159 HSP 2 Score: 29.6462 bits (65), Expect = 6.416e-29 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL+ +MDE +++ FA Sbjct: 4 SLWMGDLEPYMDENFISRAFA 24
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.414e-23 Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 211 VKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMP--NXEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 585 VK+I ++ TG GY F+E A + +Q G +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E Sbjct: 36 VKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEE 159 HSP 2 Score: 27.335 bits (59), Expect = 4.414e-23 Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 +LW+GDL +MDE ++ F+ Sbjct: 7 SLWMGDLDPYMDENFIKQAFS 27
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 1.633e-22 Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 1 Query: 181 VLHTPCEVVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 V +T + V VK+IRN+ TG GY F+EF S A + + P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S K AK++ D T ++GYGFVRF DE++Q A+ EM G Sbjct: 112 VWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250 HSP 2 Score: 25.0238 bits (53), Expect = 1.633e-22 Identity = 7/16 (43.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYL 173 TLW+G+L+ W+ E ++ Sbjct: 94 TLWMGELEPWVTEAFI 109
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.113e-22 Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 1 Query: 199 EVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAEXVLQTFXGTPMPNXEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 E V VKV+R+K + + Y F++F S A AE L + T +P F+LNWA+ G + + P+ +IFVGDL D L TF + YPS AK+++D +TG ++ YGFVRF E EQ A+ M G Sbjct: 110 EPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246 HSP 2 Score: 31.5722 bits (70), Expect = 2.113e-22 Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 126 TLWIGDLQYWMDETYLNTCFA 188 TLW+GDL+ WMD T++ +A Sbjct: 86 TLWMGDLEPWMDATFIQQLWA 106
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.815e-17 Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 1 Query: 202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMP--NXEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 VV +++IR+K TG+ GYGF+E E L+ G P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F + S K+V+D G +K GFV F E EQ RA+ ++ G Sbjct: 29 VVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157 HSP 2 Score: 26.1794 bits (56), Expect = 3.815e-17 Identity = 9/23 (39.13%), Postives = 17/23 (73.91%), Query Frame = 3 Query: 120 IRTLWIGDLQYWMDETYLNTCFA 188 + +LW+G+L+ +MDE ++ FA Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFA 23
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16 Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 250 GYGFIEFISRAGAEXVLQTFXGTPMPNX-------------EQNFRLNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594 GY F+EF ++ A+ L + TP+PN ++ FRLNWAS + TP+ ++FVGDL+ T+ L F R+ S K +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256 The following BLAST results are available for this feature:
BLAST of CF417363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417363 ID=CF417363; Name=CF417363; organism=Citrus sinensis; type=EST; length=601bpback to top |