CF417363

Overview
NameCF417363
Unique NameCF417363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3951 contig Csv1_Contig3951:178..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V++VK+IRN+ TG   GY F+EF   A AE  L    G P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159          

HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL+ +MDE +++  FA
Sbjct:    4 SLWMGDLEPYMDENFISRAFA 24          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V++VK+IRN+ TG   GY F+EF   A AE  L    G P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159          

HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL+ +MDE +++  FA
Sbjct:    4 SLWMGDLEPYMDENFISRAFA 24          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.232e-29
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V++VK+IRN+ TG   GY F+EF   A AE  L    G P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159          

HSP 2 Score: 29.6462 bits (65), Expect = 2.232e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL+ +MDE +++  FA
Sbjct:    4 SLWMGDLEPYMDENFISRAFA 24          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 4.928e-29
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V++VK+IRN+ TG   GY F+EF   A AE  L    G P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D  TG +KGYGFV+F DE EQ RA+TE  G
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQG 159          

HSP 2 Score: 29.6462 bits (65), Expect = 4.928e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL+ +MDE +++  FA
Sbjct:    4 SLWMGDLEPYMDENFISRAFA 24          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.416e-29
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V++VK+IRN+ TG   GY F+EF   A AE  L    G P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G
Sbjct:   30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 159          

HSP 2 Score: 29.6462 bits (65), Expect = 6.416e-29
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL+ +MDE +++  FA
Sbjct:    4 SLWMGDLEPYMDENFISRAFA 24          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.414e-23
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  211 VKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMP--NXEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 585
            VK+I ++ TG   GY F+E    A  +  +Q   G  +P  N  + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  ++PS KGAKVV D   G ++GYGFV+F DE+EQ +A+ E
Sbjct:   36 VKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEE 159          

HSP 2 Score: 27.335 bits (59), Expect = 4.414e-23
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            +LW+GDL  +MDE ++   F+
Sbjct:    7 SLWMGDLDPYMDENFIKQAFS 27          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.633e-22
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  181 VLHTPCEVVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMPNXEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            V +T  + V VK+IRN+ TG   GY F+EF S   A   + +    P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S K AK++ D  T  ++GYGFVRF DE++Q  A+ EM G
Sbjct:  112 VWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250          

HSP 2 Score: 25.0238 bits (53), Expect = 1.633e-22
Identity = 7/16 (43.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYL 173
            TLW+G+L+ W+ E ++
Sbjct:   94 TLWMGELEPWVTEAFI 109          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.113e-22
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 1
Query:  199 EVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAEXVLQTFXGTPMPNXEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            E V VKV+R+K +    +  Y F++F S A AE  L  +  T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TF + YPS   AK+++D +TG ++ YGFVRF  E EQ  A+  M G
Sbjct:  110 EPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246          

HSP 2 Score: 31.5722 bits (70), Expect = 2.113e-22
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  126 TLWIGDLQYWMDETYLNTCFA 188
            TLW+GDL+ WMD T++   +A
Sbjct:   86 TLWMGDLEPWMDATFIQQLWA 106          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.815e-17
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  202 VVAVKVIRNKQTGQIEGYGFIEFISRAGAEXVLQTFXGTPMP--NXEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            VV +++IR+K TG+  GYGF+E       E  L+   G P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   + S    K+V+D   G +K  GFV F  E EQ RA+ ++ G
Sbjct:   29 VVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157          

HSP 2 Score: 26.1794 bits (56), Expect = 3.815e-17
Identity = 9/23 (39.13%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  120 IRTLWIGDLQYWMDETYLNTCFA 188
            + +LW+G+L+ +MDE ++   FA
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFA 23          
BLAST of CF417363 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  250 GYGFIEFISRAGAEXVLQTFXGTPMPNX-------------EQNFRLNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFXARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 594
            GY F+EF ++  A+  L +   TP+PN              ++ FRLNWAS    +     TP+ ++FVGDL+   T+  L   F  R+ S K  +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G
Sbjct:  129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256          
The following BLAST results are available for this feature:
BLAST of CF417363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TSAP1_RAT2.232e-2948.87tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN2.232e-2948.87tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN2.232e-2948.87tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_MOUSE4.928e-2948.87tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_PONAB6.416e-2948.12tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE4.414e-2340.94tRNA selenocysteine 1-associated protein 1-like OS... [more]
YG41_SCHPO1.633e-2240.00Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO2.113e-2239.42RNA-binding post-transcriptional regulator csx1 OS... [more]
TSAP1_DANRE3.815e-1736.09tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NGR1_YEAST1.006e-1638.76Negative growth regulatory protein NGR1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-293 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417363 ID=CF417363; Name=CF417363; organism=Citrus sinensis; type=EST; length=601bp
TGATGATGATGCCGCCTCAGCCCCAGGCCCAGCCTCCTGCCATGTGGGCC
ACGCAGGCTGCTGCTCCTCAGGCGGCGGGAGTTGCGGTACCACCTCAGCA
GCANGGTCAGCCCGGTGAGATCCGGACCCTGTGGATCGGGGACTTGCAGT
ATTGGATGGATGAGACCTATCTCAACACTTGTTTTGCACACACCGTGCGA
GGTTGTCGCTGTAAAAGTAATTCGTAATAAGCAAACTGGTCAAATAGAAG
GTTATGGATTTATTGAGTTTATTTCGCGTGCTGGTGCTGAAANAGTTTTG
CAGACNTTTANCGGTACCCCTATGCCAAACNGTGAGCAGAACTTCAGGCT
AAACTGGGCATCTTTTGGTGCTGGCGAGAAGCGCGATGACACCCCTGACC
ACACAATATTTGTTGGAGATTTGGCTGCTGACGTTACTGATTACATGCTT
CAAGAGACCTTCANGGCCCGCTATCCCTCTACTAAAGGTGCAAAGGTTGT
CATTGATAGGCTTACTGGACGCACAAAGGGTTATGGATTTGTGAGATTTG
GTGATGAAAGTGAACAGCTACGTGCCATGACTGAGATGAATGGTGTCTTT
T
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