CF417367

Overview
NameCF417367
Unique NameCF417367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417367_ssr77 microsatellite CF417367_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig450 contig Csv1_Contig450:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: EB1_DICDI (Microtubule-associated protein RP/EB family member 1 OS=Dictyostelium discoideum GN=eb1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.964e-24
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:  242 GRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            GRNE+L WIN+ LQL   +IE+  SGA  CQ++D+ +PG + +  VNF+AK +Y+ I+N+  LQ+ F KL +EK
Sbjct:    5 GRNEILNWINDLLQLDYKKIEQLGSGAALCQLVDIIHPGKINLKMVNFNAKYDYEYIKNFSYLQESFAKLGVEK 78

HSP 2 Score: 48.521 bits (114), Expect = 8.964e-24
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 3 
Query:  456 LRSHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            +  ++EV++LVK RP  NLEF QW+K+Y D    G   E YN +ERR
Sbjct:   76 VEKYVEVSELVKSRPQANLEFAQWMKKYFDQYYTG---EPYNAIERR 119
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_XENTR (Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.710e-22
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SG+V CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F K+ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGSVYCQFMDMLFPGSVVLKKVKFQAKLEHEYIQNFKVLQAGFKKMGVDK 89

HSP 2 Score: 40.4318 bits (93), Expect = 4.710e-22
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_PONAB (Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.756e-21
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89

HSP 2 Score: 40.4318 bits (93), Expect = 1.756e-21
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_HUMAN (Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.756e-21
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89

HSP 2 Score: 40.4318 bits (93), Expect = 1.756e-21
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_RAT (Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.284e-21
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.284e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_MOUSE (Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.284e-21
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.284e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_BOVIN (Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.284e-21
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.284e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_COTJA (Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.973e-21
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.973e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_COTCO (Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.973e-21
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.973e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of CF417367 vs. ExPASy Swiss-Prot
Match: MARE1_CHICK (Microtubule-associated protein RP/EB family member 1 OS=Gallus gallus GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.974e-21
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:  239 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 463
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ ++K
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDK 89

HSP 2 Score: 40.0466 bits (92), Expect = 2.974e-21
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 3 
Query:  468 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 596
            I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   91 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
The following BLAST results are available for this feature:
BLAST of CF417367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
EB1_DICDI8.964e-2448.65Microtubule-associated protein RP/EB family member... [more]
MARE1_XENTR4.710e-2249.33Microtubule-associated protein RP/EB family member... [more]
MARE1_PONAB1.756e-2145.33Microtubule-associated protein RP/EB family member... [more]
MARE1_HUMAN1.756e-2145.33Microtubule-associated protein RP/EB family member... [more]
MARE1_RAT2.284e-2145.33Microtubule-associated protein RP/EB family member... [more]
MARE1_MOUSE2.284e-2145.33Microtubule-associated protein RP/EB family member... [more]
MARE1_BOVIN2.284e-2145.33Microtubule-associated protein RP/EB family member... [more]
MARE1_COTJA2.973e-2148.00Microtubule-associated protein RP/EB family member... [more]
MARE1_COTCO2.973e-2148.00Microtubule-associated protein RP/EB family member... [more]
MARE1_CHICK2.974e-2148.00Microtubule-associated protein RP/EB family member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-297 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417367 ID=CF417367; Name=CF417367; organism=Citrus sinensis; type=EST; length=729bp
GAAGGGCCGGTTGCCAGCTTTTTTCTCTACTGTCTTCTTTCGGTTTCTCT
CTTCTTCTCATTATCAATCATCTCTTTTCTTCTTCTTCTTTTTTTCTTTG
TTTAAAAAATAAATCTTGTTTTTCAAAAGTCTTCCTGTCAATTACTATTA
TTTTTGTTTTTCGAGTTTTGAAGCTTTGAAGAAACCGATTAAGAGAAAAA
TGGCAACCAACATTGGAATGATGGACAGTGCGTATTTTGTTGGAAGAAAT
GAGCTATTGACTTGGATCAACAACAGGCTTCAGCTTCATCTCTCTCGCAT
TGAAGAGGCTGCGTCCGGGGCAGTGCAGTGTCAAATGTTGGACATGACCT
ACCCAGGAGTTGTTCCAATGCACAAGGTAAATTTTGATGCGAAGACCGAA
TATGACATGATCCAAAATTACAAGGTCCTGCAGGATGTATTTAACAAGTT
GAAAATTGAGAAGCCATATTGAAGTCAATAAGCTTGTCAAAGGCCGACCT
TTGGACAACTTAGAGTTCTTACAATGGCTGAAACGTTACTGTGATTCTGT
AAATGGTGGCATCATGAATGAGAACTACAATCCTGTGGAGCGTAGATGCA
AGGGTGGGAAGGAACGGAGCTCCAGGGGTTCTCAGAAGATTTCAAAATCA
CTGCAAACAAACAATATGCATAACGCTGGCTCTGGTGACATTGGCCACAG
GTAAAATTTCTGGGCCCAGGCAAGCAAAG
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