CF417373

Overview
NameCF417373
Unique NameCF417373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:206..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.709e-38
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1
Query:   31 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            M+L KA+E VS N V VFSKT CPFCVSVK+L  +LG TFKA+ELD E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHRE
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHRE 89          

HSP 2 Score: 33.113 bits (74), Expect = 7.709e-38
Identity = 14/18 (77.78%), Postives = 18/18 (100.00%), Query Frame = 2
Query:  296 KGKLVPLLTEAGAVAKTA 349
            +GKL+PLLTEAGA+AKT+
Sbjct:   89 EGKLLPLLTEAGAIAKTS 106          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.221e-37
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 1
Query:   31 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            MA+ KAQE VSSNSVVVFSKT CP+C SVK+L  QLG  FK IELD ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+E
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQE 89          

HSP 2 Score: 28.4906 bits (62), Expect = 2.221e-37
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  296 KGKLVPLLTEAGAV 337
            +GKL+PLLTEAGAV
Sbjct:   89 EGKLIPLLTEAGAV 102          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.086e-36
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query:   31 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            MAL KA+ETV+S  VVV+SK+ CPFCV VK+LF+QLG TFKAIELD ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ E
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNE 89          

HSP 2 Score: 32.3426 bits (72), Expect = 1.086e-36
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 2
Query:  281 LHCTGKGKLVPLLTEAGAVAKTA 349
            L    +GKLVPLLTEAGA+A +A
Sbjct:   84 LALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.919e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   31 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            MA+ KA+E V+S SVVVFSKT CP+CV VKEL QQLG  FKA+ELD ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKD 89          

HSP 2 Score: 30.4166 bits (67), Expect = 6.919e-36
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  299 GKLVPLLTEAGAVA-KTA 349
            GKLVPLLTEAGA+A KTA
Sbjct:   90 GKLVPLLTEAGAIAGKTA 107          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.476e-35
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   31 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            MA+ K +E VSSN+VVVFSKT CP+C SVK+L  QLG  +K +ELD ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQ 89          

HSP 2 Score: 27.335 bits (59), Expect = 7.476e-35
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  296 KGKLVPLLTEAGAV 337
            +G+LVPLLTEAGAV
Sbjct:   89 QGQLVPLLTEAGAV 102          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.862e-31
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    4 RIKDKEDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHR 294
            ++++     MAL KA+E V+S+ VVVFSKT CPFC  VK L  +L  ++KA+ELD ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHK 114          

HSP 2 Score: 27.7202 bits (60), Expect = 5.862e-31
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  299 GKLVPLLTEAGAVA 340
            G LVPLLTEAGA+A
Sbjct:  116 GNLVPLLTEAGAIA 129          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.711e-26
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   16 KEDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            KE+ E+ + KA+E VS+  VVVFSKT C +C  VK+L  QLG TFK +ELD+ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQ 105          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.216e-20
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   37 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            + K +  + ++ +++FSKT CP+C+SVK+LF++L V    +ELD ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQ 87          

HSP 2 Score: 23.0978 bits (48), Expect = 1.216e-20
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  296 KGKLVPLLTEAG 331
            +GKL+PLL EAG
Sbjct:   87 QGKLIPLLQEAG 98          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.906e-18
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   19 EDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            + T   + + QET+S+N VV+FSKT C +C   K++F  + V +KA+ELD    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+E
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKE 136          
BLAST of CF417373 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   49 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHRE 297
            QET+S+N VV+FSKT C +C   K LF  + V +K +ELD    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+E
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKE 137          
The following BLAST results are available for this feature:
BLAST of CF417373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GLRX_SOLLC7.709e-3876.40Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO2.221e-3777.53Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ1.086e-3676.40Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH6.919e-3674.16Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO7.476e-3573.03Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ5.862e-3160.82Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH2.711e-2659.57Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.216e-2049.43Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE7.906e-1843.01Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN1.349e-1748.19Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-303 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417373 ID=CF417373; Name=CF417373; organism=Citrus sinensis; type=EST; length=561bp
TTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCA
GGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGCTTTGTC
CGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTC
AAGGCCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGC
TCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAG
GGAAACACATTGGTGGCTGCGATTCAACTACTGCACTGCACAGGGAAAGG
GAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTG
CCTAAGGGATGGCTATTCTCTGCCTGTTTATGCTAGTAATAAATAAACAA
TGTGTTGGTAGTGCTTAATCTGTCTGAATTAAATATGAAATTATGCTTAT
TTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAA
ATCTGTATGAATTTTATCAGATTTTCCATCTACTATATCCATGTAGAGTC
ATTTCTGCTGT
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