CF417376

Overview
NameCF417376
Unique NameCF417376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1984 contig Csv1_Contig1984:1551..2208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417376 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.721e-37
Identity = 69/145 (47.59%), Postives = 106/145 (73.10%), Query Frame = 2
Query:    5 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN-----NLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 424
            L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  GFFRLPND+P PFW+YP+ YI+FH +A QG ++N+  GL FD+      + GE VL + +Q+ +  SKW++L+++  M++ YR++F  +IKT E + P V+ +++
Sbjct:  519 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIA 663          
BLAST of CF417376 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.889e-30
Identity = 63/146 (43.15%), Postives = 102/146 (69.86%), Query Frame = 2
Query:    5 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 424
            +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  GFFRL  DLP  FW+YP+ ++++  +A QG +KN+F GL+FD        + GEQV+   + +Q+ +SKW DL+ +  ++V YR++F  ++K  E+ +P +KA  +
Sbjct:  498 IFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQA 643          
BLAST of CF417376 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 63/146 (43.15%), Postives = 101/146 (69.18%), Query Frame = 2
Query:    5 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF------DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 424
            +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  GFFRL  DLP  FW+YP+ YI++  +A QG +KN+F GL+F      +  + GE+V+   + +++ YSKW DLA +  ++V YRL+F  ++K  E+  P +KA  +
Sbjct:  497 IFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQA 642          
BLAST of CF417376 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 2
Query:    5 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 409
            L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  GFFR   DLP  FW+YP+ YI +  +A QG +KNE  G+++D+       + GE +L+    +    SKW+DLA++  +++ YR+ F  I+K  EK+ PV+
Sbjct:  492 LICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVI 632          
BLAST of CF417376 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 2
Query:    8 FACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKWQLQMG-YSKWVDLAILFGMVVFYRLVFLGIIK 382
            F C+L+ E LM+ +A +  +     +T   +  +M+L  G FR+   LP P W YP  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +Q+     +KW ++ +L  M   YRL+   +++
Sbjct:  550 FMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLR 679          
The following BLAST results are available for this feature:
BLAST of CF417376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AB11G_ARATH2.721e-3747.59ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB12G_ARATH1.889e-3043.15ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB15G_ARATH3.221e-3043.15ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB13G_ARATH1.654e-2641.13ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB3G_ARATH4.227e-1430.00ABC transporter G family member 3 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-306 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417376 ID=CF417376; Name=CF417376; organism=Citrus sinensis; type=EST; length=658bp
GTTATTGTTTGCTTGCATGTTGCTCGTCGAGAGCCTAATGATGATCGTTG
CAAGCTTGGTGCCCAATTATCTGACAGGCATCATAACAGGAGCTGGAATT
CAAGGCCTTATGATATTAGGCGGCGGATTTTTTCGATTGCCAAATGATCT
TCCTCATCCATTTTGGAAATACCCATTATATTATATTGCTTTCCATAAAT
ATGCGTACCAAGGAATGTTCAAGAACGAGTTTGAAGGTCTGAAATTTGAC
AACAATCTAGATGGTGAACAGGTTTTGAGAGATAAATGGCAACTGCAAAT
GGGATATTCTAAGTGGGTTGATCTTGCTATCTTGTTTGGTATGGTGGTTT
TTTATCGACTTGTATTCTTGGGAATCATCAAGACAGTTGAAAAGATGAAG
CCTGTGGTTAAAGCTTTTATGTCTGTGCCCATGAAACAAACAACTCAAAT
CATGGAAAATCCGTGTGCTACACCTCCACAAGAAGACAAAATATTTTACC
AGTGATCGTGAACAAAAGACTCTTCGGATATTCGTTAGTTCAACTAGTAA
AATTGCTCGAAGTAGGTACAAAAACTCTGTTCTCATGGGTGGAAGAGGAA
TAATTTAATTANGAAGCATATTTTAGCTTTGAAACATCCTTTACCTACTT
TTATTATT
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