CF417435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18 Identity = 50/162 (30.86%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQQHNRHHC 656 TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G ++ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ Q C Sbjct: 17 TVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQC 177
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Ashbya gossypii GN=RPB5 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18 Identity = 58/159 (36.48%), Postives = 91/159 (57.23%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 TV EM++DRGY + E++LS++DF+A Y + ++ +S QS+P++ L V FC V + +++ + I ++ TG I I QN IT A K + + +E F T L+VNIT H L PKH L+D+EK++LLK+Y ++E Q Sbjct: 18 TVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKM-MSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQ 174
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16 Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI--SHQSDPSK-RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 T +++ DRGY V+ +E++L++ F+A++ G ++DR +S +D +K I + F V + +R+ + + + + TG ILI N +T A K + QF +E FQ +DL+VNIT H L PKH +L+ EK++LL +Y + E Q Sbjct: 17 TAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQ 169
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_KLUMA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16 Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 TV EM++DRGY + EI+LS++DF+ Y + ++ +S QS+P++ + V FC V V +++ + I ++ TG I I Q+ IT A K + V E F L+VNIT H L PKH L+D EK++LLK+Y ++E Q Sbjct: 18 TVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKM-MSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQ 174
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_KLULA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Kluyveromyces lactis GN=RPB5 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16 Identity = 57/159 (35.85%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 TV EM++DRGY + EI+LS++DF+A Y + ++ +S QS+P++ + V FC V V +++ + I ++ TG I I Q+ IT A K + V E F L+VNIT H L PKH L++ EK++LLK+Y ++E Q Sbjct: 18 TVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKM-MSFQSNPTEESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQ 174
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16 Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 TV EM+KDRGY + E+ L ++DF+A Y + ++ +S Q++P++ + V FC V V +++ + I ++ TG I + QN IT A K V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E Q Sbjct: 18 TVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKM-MSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQ 174
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16 Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 TV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++ + V FC V V +++ + I + TG I I QN IT A K V + +E F L+VNIT H L PKH L ++EK +LLK+Y ++E Q Sbjct: 18 TVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQ 174
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15 Identity = 45/155 (29.03%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 T++++ DRGY V E++ ++++FRA +G P R L + ++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQ 169
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15 Identity = 44/155 (28.39%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169
BLAST of CF417435 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15 Identity = 44/155 (28.39%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 192 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHXVLTDQEKEKLLKKYSIEEKQ 635 T++++ DRGY V E++ ++++F+A +G P R L + ++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E Q Sbjct: 16 TIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQ 169 The following BLAST results are available for this feature:
BLAST of CF417435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417435 ID=CF417435; Name=CF417435; organism=Citrus sinensis; type=EST; length=700bpback to top |