CF417462

Overview
NameCF417462
Unique NameCF417462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig990 contig Csv1_Contig990:551..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PARUW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.034e-26
Identity = 68/144 (47.22%), Postives = 89/144 (61.81%), Query Frame = 3
Query:    6 IEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 434
            + P  I+  V+AL   P    ST VT L   E+A + + VKCV+D  G A+YFSR LIP NK+        Y  HLG+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  VD    GVD PED+ K+E ++ ++N
Sbjct:  113 LNPLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHKVEEWLCKQN 256          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_SOLUE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425
            LI+P  ID  V  L   PD +  T    ++ P +  DPN VK V D+ G AIYFSR  IP+++    +   PY  H+G+  Y  +FL  Y  L   PL+  E LEQL+ LENGY+++V++ ++E+ GVD PED+E++    +
Sbjct:  103 LIDPAAIDAAVLPLVHEPDVLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIPFDRDRSADT--PYFKHVGLYVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVETEYESLGVDTPEDLERVSRLFK 242          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_FUSNN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=kdsB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 58/146 (39.73%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNL 437
            LIE E+I+ +++  +   D   +T    L   E+  +PN VK V D + YAIYFSR +IPY +    N    Y  H+GI  Y  +F+  Y  +  TPL+  E LEQL+VLENGYK+KV++  H   GVD  E++E++ ++++E N+
Sbjct:  101 LIEYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGIYGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETTHSLIGVDTQENLEQVINYIKENNI 243          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_VARPS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Variovorax paradoxus (strain S110) GN=kdsB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA--HGVDAPEDVEKIES 416
            LI+P +ID V  AL A P+A  STA   +   D F +PN VK V+D  G A+YFSR  IP+ + G  N   P +L       H+GI  Y + F++ +P L P P++  E LEQL+ L +G+++  + V H A   GVD P D+E++ +
Sbjct:  103 LIDPALIDAVASALAAHPEAAMSTAAHEIDSLDDFLNPNVVKAVLDAQGNALYFSRAPIPWWRDGSANGAPPSVLPAPAPLRHIGIYGYRAGFVRSFPSLAPAPVEATEALEQLRALWHGHRI-AVHVSHVAPGPGVDTPADLERVRA 249          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_DICNV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=kdsB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIES 416
            L+ P++I  V + L     A  +T  T     ++  PN VK V D  GYA+YFSR ++PY +     P   YL H+GI +Y    LK YP L PTPL+  E LEQL+ LE+G+K+ V ++D     GVD+PED+ ++++
Sbjct:  104 LLPPDLITTVARTLIEHTQASVATLATVCDAPES--PNTVKVVCDCAGYALYFSRSVMPYVRDAAA-PPVSYLRHIGIYAYRVQLLKRYPQLAPTPLEQAEKLEQLRFLEHGFKIAVAQIDEAPPAGVDSPEDLARVQA 239          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_THEYD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=kdsB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 56/141 (39.72%), Postives = 85/141 (60.28%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 413
            LI+ E+ID ++  ++   D++ + A    K +D F+PN VK V D +GYA+YFSR  IP+++     G     F Y  H+GI  Y+   LK + GL  + L+  E LEQL+ LENG K+KV   ++++ G+D PED+E  E
Sbjct:  109 LIKKEMIDQLIDLMKNENDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSPIPFDREKFIKGFSKNNFMYK-HIGIYGYNVRILKNFVGLPMSRLEEIESLEQLRALENGIKIKVGLTEYDSFGIDTPEDLEVAE 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOUR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 59/146 (40.41%), Postives = 82/146 (56.16%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 410
            LIEP +ID  +K L      +  T  T +K   D   PN VK V D  GYA+YFSR  +P N   K N          +     H+G+  Y  +FL  +  + PT L++ E LEQL+VLENGY++KV++ D+E+ GVD P D+EK+
Sbjct:  101 LIEPAMIDEAIKPLAEDSSVMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFASRKLLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDYESIGVDTPGDLEKV 245          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_PELCD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKS-----GKVNPQFPYLL-HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 425
            LI+P +I+  V  L   P     T  T L     + DPN VK V D  G+A+YFSR  IP+ +        V+P    L  H+G+  Y  +FL  + GL  +PL+  E LEQL+ LENGY ++V++ D  + GVD PED+ ++E+ +R
Sbjct:  101 LIDPHMIEAAVAPLSEDPAIPMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALYFSRAPIPHPRELAVDDSAVSPASMGLFRHIGLYVYRKDFLLTFAGLPESPLERLEKLEQLRALENGYAIRVVETDRVSLGVDTPEDLVRVEAHLR 248          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain M21) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 431
            LI+P +ID  ++ L   P    +T    +K   D   PN VK V D  G  +YFSR  +P+ +           V+ +     H+G+  Y   FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P D++K+   +++R
Sbjct:  101 LIDPAMIDEAIRPLLDDPSIPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKLLCYKHVGLYVYRREFLPVFAGLKPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTPADLDKVLERLKDR 252          
BLAST of CF417462 vs. ExPASy Swiss-Prot
Match: KDSB_CHRVO (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chromobacterium violaceum GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    3 LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKI 410
            LI+PE+I+ + + L  A   V + A       D F+PN VK  +D HG A+YFSR  IPY +      +       P   H+G+  Y + FL  Y GL P PL+  E LEQL+VL +GY + V   D   A GVD PED+E++
Sbjct:  104 LIQPELINRLAELLAGADAPVATLAHALHDAADHFNPNVVKVALDKHGRALYFSRAPIPYARDAYAADRSALPAGLPVYRHIGMYGYRAGFLAAYAGLEPGPLEQYEALEQLRVLWHGYGIAVALADEAPAAGVDTPEDLERV 246          
The following BLAST results are available for this feature:
BLAST of CF417462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
KDSB_PARUW1.034e-2647.223-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SOLUE5.310e-2340.143-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FUSNN5.310e-2339.733-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VARPS6.491e-2139.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DICNV1.446e-2040.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_THEYD3.222e-2039.723-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOUR3.222e-2040.413-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PELCD5.495e-2038.513-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSM9.374e-2035.533-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHRVO9.374e-2039.863-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-392 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417462 ID=CF417462; Name=CF417462; organism=Citrus sinensis; type=EST; length=681bp
CTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCTCTGCAGGCA
GCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAAACCTGAAGA
TGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATCATGGTTATG
CCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCAGGAAAAGTC
AATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGCTATGACTC
AAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCCTACAACTAG
AAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTATAAGATGAAG
GTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTCCAGAAGACGT
TGAGAAGATAGAATCATTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAG
TGACATAATCTGATTAAAAGGAAAGGATGCGAATTTGCCTGTACCAGCAG
TCAGCTTGCTCCATGTTAATTATAGTTTGGATTGGGTGGTGTGTTCTTTC
TCTCTGTGACAGTCTCTTCCCCGGGAAAATAATTCTATTTATATTTGCCT
GCCACGGTTTTTCCCATTGTTGGAGTTACCGGAGTTTTTTGTGGGTGTAC
TTGTACCAGTAGCTGTGAGTAACAGCAATTT
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