CF417463

Overview
NameCF417463
Unique NameCF417463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2239 contig Csv1_Contig2239:461..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.852e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:   94 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.353e-18
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:   95 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.415e-17
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   96 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.415e-17
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   93 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.848e-17
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            I+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:   91 ISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.174e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:   93 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF417463 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 3 
Query:    3 ITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 134
            ITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   82 ITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CF417463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
H2AV3_ORYSJ2.852e-18100.00Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV1_ORYSJ6.353e-1897.73Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.415e-1795.45Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH1.415e-1795.45Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV3_ARATH1.848e-1795.45Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ARATH9.174e-1790.91Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZ_SHEEP1.121e-1484.09Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT1.121e-1484.09Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]
H2AZ_PONAB1.121e-1484.09Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3[more]
H2AZ_ONCMY1.121e-1484.09Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-393 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417463 ID=CF417463; Name=CF417463; organism=Citrus sinensis; type=EST; length=360bp
GTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTT
GACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATAT
CCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGT
CATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATC
TAAATGAGAAATGATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCT
TCAATCCTCATTTCATGCAGCGACGAATTATGGTGCTTGTTTTTTCCCAT
GTTGGTATTGAACTGTTACTGTTTAATTTTTAAATAATTCTATATCTGTT
TCTTTGTTTG
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