CF417464

Overview
NameCF417464
Unique NameCF417464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7759 contig Csv1_Contig7759:145..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 4.549e-54
Identity = 105/198 (53.03%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   43 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            AF N+NS +GLKKLDE+LLTRSYITGYQASKDDITV++ALSK P+SE+VNVSRW+ HIDALLRI               +P+                           LFG                              VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDL
Sbjct:    3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDL 200          

HSP 2 Score: 41.2022 bits (95), Expect = 4.549e-54
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VS+DT+IEE L  EPINEYVQSC
Sbjct:  201 VSIDTMIEEQLTVEPINEYVQSC 223          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.008e-53
Identity = 104/198 (52.53%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   43 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            AF N+NS  GLKKLDE+LLTRSYITGYQASKDDITV++AL+K P+S+YVN SRWY HIDALLRI               AP+                           LFG                              VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDL
Sbjct:    3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDL 200          

HSP 2 Score: 41.2022 bits (95), Expect = 1.008e-53
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VS+DT+IEE L  EPINEYVQSC
Sbjct:  201 VSIDTMIEEQLTVEPINEYVQSC 223          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.294e-50
Identity = 100/195 (51.28%), Postives = 117/195 (60.00%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MAV F +++S  GL+KLDEYLL+RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRWY H++ALLRI               +                       LFG                              VLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDL
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDL 195          

HSP 2 Score: 37.3502 bits (85), Expect = 1.294e-50
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VSVD L+E++L  EP NEY+QSC
Sbjct:  196 VSVDDLVEDYLTAEPANEYIQSC 218          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.989e-48
Identity = 106/200 (53.00%), Postives = 115/200 (57.50%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAP---VATXXXXXXXXXXXXXXXXXXX-LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MAV F +++S  GL  LD YLL+RSYITGYQASKDD+TV+SA+ KA  + YVNVSRWYKHIDALLRI               AP   VAT                    LFG                               VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDL
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDL 200          

HSP 2 Score: 40.0466 bits (92), Expect = 1.989e-48
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VSVD LIE++L  EPINEYVQSC
Sbjct:  201 VSVDNLIEDYLTVEPINEYVQSC 223          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.075e-46
Identity = 107/198 (54.04%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXA-PVATXXXXXXXXXXXXXXXXXXX--LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MAV+F NV+S  GLKKLDEYLLTRSYI+GYQAS DD+ VYSA S APSS Y NV+RW+ HIDALLR+               A P A+                     LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDL
Sbjct:    1 MAVSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 198          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.037e-46
Identity = 101/195 (51.79%), Postives = 115/195 (58.97%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MA+   NVNS  GL+KLDEYLLTRSYI+GYQASKDD+TV+++L  AP++ YVNV+RWY HI ALLR                A   +                   LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDL
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 195          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.748e-36
Identity = 81/197 (41.12%), Postives = 100/197 (50.76%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV--ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MAV F ++++  GLK L+E+L  ++YI+G Q S DD+ VY+A+ + P   + N S+WY  + + L                 AP   A                    LF                               VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDL
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGGGVAPPSEAHPHTEEPAADGDGDDDDDIDLFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDL 197          

HSP 2 Score: 36.5798 bits (83), Expect = 6.748e-36
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQS 685
            VSVD LIE+HL  EP NEY+QS
Sbjct:  198 VSVDNLIEDHLTSEPNNEYIQS 219          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.297e-35
Identity = 76/195 (38.97%), Postives = 100/195 (51.28%), Query Frame = 1
Query:   34 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            MAV F ++++  G+K ++E+L  ++YI+G Q S DD+ VY+A+   PS  + N S+WY+ + +  ++               +  A                    LFG                              VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDL
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS--QLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDL 193          

HSP 2 Score: 34.2686 bits (77), Expect = 3.297e-35
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VS D LIE+ L  EP NEY+QSC
Sbjct:  194 VSPDNLIEDFLTSEPNNEYIQSC 216          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.550e-31
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDL
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDL 193          

HSP 2 Score: 45.0542 bits (105), Expect = 1.550e-31
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  620 VSVDTLIEEHLLEEPINEYVQSC 688
            VSVD+LIEEHL EEPINE+VQSC
Sbjct:  194 VSVDSLIEEHLTEEPINEFVQSC 216          
BLAST of CF417464 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  451 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDL 618
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDL 187          
The following BLAST results are available for this feature:
BLAST of CF417464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D2_ARATH4.549e-5453.03Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.008e-5352.53Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR1.294e-5051.28Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU1.989e-4853.00Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1D1_ORYSJ2.075e-4654.04Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ6.037e-4651.79Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1B1_ARATH6.748e-3641.12Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B2_ARATH3.297e-3538.97Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ1.550e-3196.43Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B_WHEAT2.468e-2391.07Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-394 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417464 ID=CF417464; Name=CF417464; organism=Citrus sinensis; type=EST; length=690bp
CTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCGCATTCGA
TAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATACCTTCTTA
CTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGATATCACTGTG
TATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATGTGTCTCG
GTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGCGTTACTGGTG
AAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCCCCG
GTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGTGGA
TCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCACGCG
CGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCATCA
GTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAAGCT
TGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAGCCA
GCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATGCTT
ACAATTGTGGATGACTTGGGTGTCTGTTGACACCCTCATTGAGGAACACC
TGCTGGAAGAACCAATTAATGAATATGTCCAGAGCTGTGA
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