CF417465

Overview
NameCF417465
Unique NameCF417465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig524 contig Csv1_Contig524:140..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 4.859e-104
Identity = 187/229 (81.66%), Postives = 205/229 (89.52%), Query Frame = 3
Query:    6 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E+VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ SEHLVTLLAVVPKYS KDWLA YETLT YVVPRSS  L+EDNEYALYTVTLF
Sbjct:    1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEHLVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLF 229          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.836e-89
Identity = 163/234 (69.66%), Postives = 191/234 (81.62%), Query Frame = 3
Query:    6 MASRYWVVSLPV--QNSAA---SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            MA+RYW+ +LPV   N AA   ++W RLQE IS+HSFDTPLYRF +P+LR GT           VKSN F+E VSHKIRRQIE+LER  G+E  +L+VDGVPVD+YLTRFVWDE KYP  +PL+E V  I + VAKIEDD+KVRVAEY NV+SQL AINRKQ+GSLAVRDLSNL+KPED++TSEHLVTLL++VPKYS KDWLASYE+L ++VVPRSS  LYEDNEYALYTVTLF
Sbjct:    1 MATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERAGGVEPGTLTVDGVPVDSYLTRFVWDEGKYPVNAPLKETVASIQSQVAKIEDDMKVRVAEYGNVKSQLGAINRKQTGSLAVRDLSNLIKPEDMVTSEHLVTLLSIVPKYSQKDWLASYESLDTFVVPRSSKKLYEDNEYALYTVTLF 234          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.049e-42
Identity = 90/229 (39.30%), Postives = 141/229 (61.57%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W++L    ++ +  +   +FNIP+L+VGT            K ++FVESV  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V++I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+L+TLL VVPK +  DW  +YETL   VVPRS+ LL+ED++  L+TVTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWDKLMTATTRTNNLSTNNKFNIPDLKVGTLDVLVGLSDELAKLDAFVESVVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYVTRFQWDMAKYPIKQSLKNISEIISKQVSQIDNDLKARASAYNNLKGNLQNLERKNAGSLLTRSLADIVKKDDFVLDSEYLITLLVVVPKTNYTDWQRTYETLAEMVVPRSTNLLFEDHDSGLFTVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 91/229 (39.74%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 91/229 (39.74%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 91/229 (39.74%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.790e-40
Identity = 90/229 (39.30%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.950e-40
Identity = 90/229 (39.30%), Postives = 132/229 (57.64%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 164.466 bits (415), Expect = 4.950e-40
Identity = 90/229 (39.30%), Postives = 132/229 (57.64%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLF 230          
BLAST of CF417465 vs. ExPASy Swiss-Prot
Match: VATC_MANSE (V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.443e-40
Identity = 90/229 (39.30%), Postives = 133/229 (58.08%), Query Frame = 3
Query:   12 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSXKDWLASYETLTSYVVPRSSXLLYEDNEYALYTVTLF 692
            S YW++S P   +    W  L +    ++     Y+F IP+L+VGT            K ++FVE V+ K+ + + E LE        +L+ +   +  YLTRF WD AKYP    LR I D I   V +I+ DLKV+ + YN ++  L  + +KQ+GSL  R+L++LVK E  I+ SE+L TLL +VPK    DW A+YE +T  +VPRS+ L+++D +Y L+TVTLF
Sbjct:    2 SEYWLISAPGDKTCQQTWEALNQATKANNLSLN-YKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLTANNDDLPHYLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLQNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLIHQDGDYGLFTVTLF 229          
The following BLAST results are available for this feature:
BLAST of CF417465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_ARATH4.859e-10481.66V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU9.836e-8969.66V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
VTC1A_DANRE4.049e-4239.30V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC1_PONAB1.303e-4039.74V-type proton ATPase subunit C 1 OS=Pongo abelii G... [more]
VATC1_MACFA1.303e-4039.74V-type proton ATPase subunit C 1 OS=Macaca fascicu... [more]
VATC1_HUMAN1.303e-4039.74V-type proton ATPase subunit C 1 OS=Homo sapiens G... [more]
VATC1_BOVIN3.790e-4039.30V-type proton ATPase subunit C 1 OS=Bos taurus GN=... [more]
VATC1_RAT4.950e-4039.30V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE4.950e-4039.30V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]
VATC_MANSE8.443e-4039.30V-type proton ATPase subunit C OS=Manduca sexta PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-395 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417465 ID=CF417465; Name=CF417465; organism=Citrus sinensis; type=EST; length=693bp
GTGAAATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAGTACAAAATTCA
GCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCTAAACATTCATT
TGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCGTGTTGGAACCC
TAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGTCAAATAGCTTT
GTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAGGAACTGGAGAG
GGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGGAGTACCAGTTG
ATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGTACCCAACTATG
TCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTTGTGGCAAAGAT
TGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAATGTCCGCAGTC
AGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAGCTGTTCGTGAT
CTTTCCAATCTGGTAAAACCAGAGGATATCATTACCTCAGAACATCTTGT
AACCCTTCTTGCTGTTGTCCCCAAGTACTCCCANAAGGATTGGTTGGCTA
GCTATGAGACGTTGACTAGCTATGTGGTCCCCAGGTCCTCCNAGCTATTG
TATGAGGATAATGAATATGCCCTTTACACTGTCACACTATTTG
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