CF417466

Overview
NameCF417466
Unique NameCF417466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig458 contig Csv1_Contig458:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417466 vs. ExPASy Swiss-Prot
Match: BCCP1_ARATH (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  214 RNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSI-----LASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEAL 558
            R+  V FRLS+ KPKLRF +K S+ S+    VVK+Q N+V+   SSNA+      + + K+ N    S      LA+EESISEF++QV++L+KLVDSRDIVELQLKQLDCEL+IRKKEAL
Sbjct:   32 RSRRVSFRLSA-KPKLRFLSKPSRSSYP---VVKAQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVTTLVKLVDSRDIVELQLKQLDCELVIRKKEAL 147          
BLAST of CF417466 vs. ExPASy Swiss-Prot
Match: BCCP_SOYBN (Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic OS=Glycine max GN=ACCB-1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  235 RLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATP----AAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEAL 558
            R S     LRF  K         T VK+QLNEVA D SSNA++ P    + E   AK   EPS S+LA++ES+S+FI+QV+SL+KLVDSRDIVEL+LKQ D E+ IRKKEA+
Sbjct:   22 RFSPKPNNLRFATKPGNTL--LCTRVKAQLNEVALDSSSNATSPPMKAKSKEEPPAKPLAEPSSSVLATQESVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAM 131          
BLAST of CF417466 vs. ExPASy Swiss-Prot
Match: BCCP2_ARATH (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  310 VKSQLNEVAFDGSSNASATPAAETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEAL 558
            +++  NEV    S++   T         + N P P+       +SEF+++VS L+KLVDS+DIVEL+LKQLDCE++IRKKEAL
Sbjct:   52 LRATTNEVV---SNSTPMTNGGYMNGKAKTNVPEPA------ELSEFMAKVSGLLKLVDSKDIVELELKQLDCEIVIRKKEAL 125          
The following BLAST results are available for this feature:
BLAST of CF417466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BCCP1_ARATH3.873e-2455.83Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
BCCP_SOYBN4.008e-2154.46Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
BCCP2_ARATH4.910e-1145.78Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-396 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417466 ID=CF417466; Name=CF417466; organism=Citrus sinensis; type=EST; length=697bp
ACAAAACGACCTTTGCTGCTGCCGTTGTTGTGCTCTCAGCTTTTGACGGA
TTCTCCAATTTCCTCCGTCTCTCTCTAAATTCGAACTCATTTTGCTTCCC
AATCAAATCGAAAAAGAAAAAAAAAAATTGTAATGGCTTCCTCCTCTCTT
TCCACCGGCACTCCATCAGCTTCAGCTTTCTCCAAAAACTCCTCCAGTTT
GGTCCATTATTACCGTAATGGCACTGTCTTTTTTCGCCTCTCTTCTTCCA
AGCCCAAGCTCAGATTCTTCGCCAAGGGCTCACAGCCTAGTTGGAAATGC
GCCACTGTGGTGAAATCCCAATTGAATGAGGTTGCTTTCGATGGATCATC
AAATGCTTCGGCTACACCAGCAGCAGAAACAAAGGATGCTAAGCAACCAA
ATGAGCCTTCACCTTCAATTTTGGCTTCGGAGGAATCAATATCAGAGTTC
ATATCCCAAGTTTCAAGTCTTATTAAGCTTGTTGATTCTAGGGATATTGT
GGAGTTGCAGTTAAAGCAGCTAGACTGTGAACTAATAATCCGGAAAAAAG
AGGCCTTGCCTCAACCACCAGCTCCTGCTTCAATGGCTATGATGCATTCA
CCTTCTCCACCACCTGTAATGCCACCGACCCAACCTGCACCTGCGCCTAC
ATCTTCTGCACCTTCTGCTTCTCCAGCTCCACCGGCATCACCTCCTT
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