CF417473

Overview
NameCF417473
Unique NameCF417473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig460 contig Csv1_Contig460:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417473 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 3 
Query:    3 NAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 113
            N GKL+VVVFPSFGERYLSSVLFES+K+EAE+MVFEP
Sbjct:  289 NKGKLVVVVFPSFGERYLSSVLFESIKREAENMVFEP 325
[Close]
BLAST of CF417473 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3 
Query:    3 NAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 113
            NAGKL VVVFPSFGERYLSSVLF+S+KKEAESMV EP
Sbjct:  289 NAGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVEP 325
[Close]
BLAST of CF417473 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 3 
Query:    3 NAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFEP 113
            NAGKLIV VFPSFGERYLS+VLFESVK+E E+MVFEP
Sbjct:  289 NAGKLIVAVFPSFGERYLSTVLFESVKRETENMVFEP 325
[Close]
BLAST of CF417473 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.779e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:    3 NAGKLIVVVFPSFGERYLSSVLFESVKKEAESMVFE 110
            NAGKLIV VFPSFGERYLSSVLF+SV+KEAESMV E
Sbjct:  289 NAGKLIVAVFPSFGERYLSSVLFDSVRKEAESMVIE 324
The following BLAST results are available for this feature:
BLAST of CF417473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CYSK2_ORYSJ6.772e-1286.49Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_MAIZE1.155e-1189.19Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK_CITLA1.970e-1186.49Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL9.779e-1188.89Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-403 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417473 ID=CF417473; Name=CF417473; organism=Citrus sinensis; type=EST; length=389bp
AAAATGCTGGAAAACTCATTGTGGTGGTCTTCCCCAGCTTCGGAGAGCGA
TACCTCTCTTCTGTTTTATTTGAATCTGTGAAAAAGGAGGCAGAGAGCAT
GGTGTTTGAGCCGTGAGATATGCCCAAACCTTTTGAGTCACCAGTCCCGT
ATTCTGTGGGGACTAACTTGCTTTTCTAGTCAGAATTTCATTTTGGTTGG
ATGCTTTCGCATCTTCATGTTTTCTTATAAACAACTACAAATCTTTGCAA
TTCCTTACCCTGTGGAGGAGGTTTCACTGTTTGTGTAAAAATCTGTGGAA
ACTTATATGGGTTAAAGTTCTGTAGTCTATACTGCGCTTGAGAATGAATA
AAGTTTGGAATTAGGTGTTGTAANAAAAAAAAAAAAAAA
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