CF417486

Overview
NameCF417486
Unique NameCF417486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417486 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.305e-28
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 DVRTPPIHFACSDTVPCTKITMAEVELLPYEGQLLDDPFCWNAYGTQETLTIPPIDCLQEGEPQSEQEV-SAYGC 222
            DVR+PPIHFACSDTV CT ITM+EVELLP EG+L+DDPFCWNAYG QETLTIPPIDCL +G P  E+   S YGC
Sbjct:  401 DVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDDPFCWNAYGKQETLTIPPIDCLLDGSPVVEEAYDSNYGC 475
The following BLAST results are available for this feature:
BLAST of CF417486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR4_ARATH3.305e-2876.00Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-416 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417486 ID=CF417486; Name=CF417486; organism=Citrus sinensis; type=EST; length=530bp
GACGTACGCACCCCACCAATCCACTTTGCCTGCAGTGACACTGTGCCCTG
CACAAAGATTACAATGGCTGAAGTTGAGCTTCTCCCATATGAAGGACAAC
TGCTTGATGATCCATTTTGTTGGAATGCTTATGGAACTCAAGAAACTTTA
ACTATTCCTCCTATTGATTGCTTGCAAGAAGGGGAGCCTCAATCAGAGCA
AGAAGTTTCTGCATACGGCTGCTAAAATTATTACACATTATAGTTGCATT
TTTCGTTTATGGCAGTAGCATTTTCTGTGATTGATATGATATAGAATAGT
AGTGTACAAGAGAATACAAGTGCCATTAGCTTTTATGGCTTTTGATTATT
ATTGGTAGTACTACTTAGGTTCCATCCCTATTAGGGTATATTTCCCTATT
GTGTGATGAGATTTAGTAACATGGGTCTGGTTTTTTGGCCCTGTATTTGT
AATCGATTGTAATATGCTACAAGTATTTCAGCTACATTTTTGGTTTCAAT
AAATATATTAAACTCTTGTTTCCCTGTTCT
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